How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

classic Classic list List threaded Threaded
11 messages Options
| Threaded
Open this post in threaded view
|

How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Dear All,

I have Dockerized the Galaxy and it's running as a containerized application on the DC/OS server. It can be accessed at http://bioopenergalaxy.insight-centre.org/.

However, I'm wondering how to FTP files on it. Please note that I have the following configuration on the galaxy.ini file:

# This should point to a directory containing subdirectories matching users' identifier (defaults to e-mail), where Galaxy will look for files.
ftp_upload_dir = /export/ftp

# This should be the hostname of your FTP server, which will be provided to users in the help text.
ftp_upload_site = bioopenergalaxy.insight-centre.org


Any help or pointer would be highly appreciated.




Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Devon Ryan
Are you using galaxy-docker-stable from Björn
(https://github.com/bgruening/docker-galaxy-stable) or did you make
your own dockerized-Galaxy version? Björn's runs proFTPd by default,
so if you're using it then ensure that's running in the container.

Devon
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
<[hidden email]> wrote:

> Dear All,
>
> I have Dockerized the Galaxy and it's running as a containerized application
> on the DC/OS server. It can be accessed at
> http://bioopenergalaxy.insight-centre.org/.
>
> However, I'm wondering how to FTP files on it. Please note that I have the
> following configuration on the galaxy.ini file:
>
> # This should point to a directory containing subdirectories matching users'
> identifier (defaults to e-mail), where Galaxy will look for files.
> ftp_upload_dir = /export/ftp
>
> # This should be the hostname of your FTP server, which will be provided to
> users in the help text.
> ftp_upload_site = bioopenergalaxy.insight-centre.org
>
>
> Any help or pointer would be highly appreciated.
>
>
>
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Hi Devon,

Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy is built on top of it (version 17.05). My system admin has provided me with the IP address of this DNS and when I issue the FTP command as follows:

asif@ubuntu:~$ ftp 10.196.106.60 8021

It shows:

Connected to 10.196.106.60.
220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
Name (10.196.106.60:asif):

It seems ProFTPD is already configured. While running the container, port 8021 was mapped to 21.


Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
Are you using galaxy-docker-stable from Björn
(https://github.com/bgruening/docker-galaxy-stable) or did you make
your own dockerized-Galaxy version? Björn's runs proFTPd by default,
so if you're using it then ensure that's running in the container.

Devon
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Dear All,
>
> I have Dockerized the Galaxy and it's running as a containerized application
> on the DC/OS server. It can be accessed at
> http://bioopenergalaxy.insight-centre.org/.
>
> However, I'm wondering how to FTP files on it. Please note that I have the
> following configuration on the galaxy.ini file:
>
> # This should point to a directory containing subdirectories matching users'
> identifier (defaults to e-mail), where Galaxy will look for files.
> ftp_upload_dir = /export/ftp
>
> # This should be the hostname of your FTP server, which will be provided to
> users in the help text.
> ftp_upload_site = bioopenergalaxy.insight-centre.org
>
>
> Any help or pointer would be highly appreciated.
>
>
>
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Devon Ryan
You should be able to login with the email address and password that
you use for Galaxy then. That works for my instances at least.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
<[hidden email]> wrote:

> Hi Devon,
>
> Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy is
> built on top of it (version 17.05). My system admin has provided me with the
> IP address of this DNS and when I issue the FTP command as follows:
>
> asif@ubuntu:~$ ftp 10.196.106.60 8021
>
> It shows:
>
> Connected to 10.196.106.60.
> 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
> Name (10.196.106.60:asif):
>
> It seems ProFTPD is already configured. While running the container, port
> 8021 was mapped to 21.
>
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>>
>> Are you using galaxy-docker-stable from Björn
>> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> so if you're using it then ensure that's running in the container.
>>
>> Devon
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Dear All,
>> >
>> > I have Dockerized the Galaxy and it's running as a containerized
>> > application
>> > on the DC/OS server. It can be accessed at
>> > http://bioopenergalaxy.insight-centre.org/.
>> >
>> > However, I'm wondering how to FTP files on it. Please note that I have
>> > the
>> > following configuration on the galaxy.ini file:
>> >
>> > # This should point to a directory containing subdirectories matching
>> > users'
>> > identifier (defaults to e-mail), where Galaxy will look for files.
>> > ftp_upload_dir = /export/ftp
>> >
>> > # This should be the hostname of your FTP server, which will be provided
>> > to
>> > users in the help text.
>> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >
>> >
>> > Any help or pointer would be highly appreciated.
>> >
>> >
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/
>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Did you mean using the admin user email id and the password?

Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
You should be able to login with the email address and password that
you use for Galaxy then. That works for my instances at least.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Hi Devon,
>
> Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy is
> built on top of it (version 17.05). My system admin has provided me with the
> IP address of this DNS and when I issue the FTP command as follows:
>
> asif@ubuntu:~$ ftp 10.196.106.60 8021
>
> It shows:
>
> Connected to 10.196.106.60.
> 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
> Name (10.196.106.60:asif):
>
> It seems ProFTPD is already configured. While running the container, port
> 8021 was mapped to 21.
>
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>>
>> Are you using galaxy-docker-stable from Björn
>> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> so if you're using it then ensure that's running in the container.
>>
>> Devon
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Dear All,
>> >
>> > I have Dockerized the Galaxy and it's running as a containerized
>> > application
>> > on the DC/OS server. It can be accessed at
>> > http://bioopenergalaxy.insight-centre.org/.
>> >
>> > However, I'm wondering how to FTP files on it. Please note that I have
>> > the
>> > following configuration on the galaxy.ini file:
>> >
>> > # This should point to a directory containing subdirectories matching
>> > users'
>> > identifier (defaults to e-mail), where Galaxy will look for files.
>> > ftp_upload_dir = /export/ftp
>> >
>> > # This should be the hostname of your FTP server, which will be provided
>> > to
>> > users in the help text.
>> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >
>> >
>> > Any help or pointer would be highly appreciated.
>> >
>> >
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/
>
>


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Devon Ryan
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:

> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Ok, thanks for the clarification. I will try again and get back to you.



On Jun 23, 2017 11:03 AM, "Devon Ryan" <[hidden email]> wrote:
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Hi Devon,

I tried to connect to Galaxy instance with FTP client WinSCP as follows:

Inline images 1

But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.




Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 11:05, Md. Rezaul Karim <[hidden email]> wrote:
Ok, thanks for the clarification. I will try again and get back to you.



On Jun 23, 2017 11:03 AM, "Devon Ryan" <[hidden email]> wrote:
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Devon Ryan
Do you get an error of some sort?

--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg

On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <[hidden email]> wrote:
Hi Devon,

I tried to connect to Galaxy instance with FTP client WinSCP as follows:

Inline images 1

But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.




Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 11:05, Md. Rezaul Karim <[hidden email]> wrote:
Ok, thanks for the clarification. I will try again and get back to you.



On Jun 23, 2017 11:03 AM, "Devon Ryan" <[hidden email]> wrote:
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Md. Rezaul Karim
Timeout detected. (data connection)
Could not retrieve directory listing
Error listing directory '/'.


However, when I tried from Ubuntu terminal it gets connected. However, I am getting below error:

asif@ubuntu:~$ ftp 10.196.106.60 8021
Connected to 10.196.106.60.
220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
Name (10.196.106.60:asif): [hidden email]
331 Password required for [hidden email]
Password:
230 User [hidden email] logged in
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> ls
500 Illegal PORT command
ftp: bind: Address already in use
ftp> quit
221 Goodbye.


Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 12:01, Devon Ryan <[hidden email]> wrote:
Do you get an error of some sort?

--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg

On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <[hidden email]> wrote:
Hi Devon,

I tried to connect to Galaxy instance with FTP client WinSCP as follows:

Inline images 1

But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.




Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 11:05, Md. Rezaul Karim <[hidden email]> wrote:
Ok, thanks for the clarification. I will try again and get back to you.



On Jun 23, 2017 11:03 AM, "Devon Ryan" <[hidden email]> wrote:
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|

Re: How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Devon Ryan
This is likely an issue with using active vs. passive FTP. Unfortunately since you're not using `--net=host` you can't use passive ftp (at least it's never worked for me). Perhaps sftp on port 8022 will work better.

--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg

On Fri, Jun 23, 2017 at 1:06 PM, Md. Rezaul Karim <[hidden email]> wrote:
Timeout detected. (data connection)
Could not retrieve directory listing
Error listing directory '/'.


However, when I tried from Ubuntu terminal it gets connected. However, I am getting below error:

asif@ubuntu:~$ ftp 10.196.106.60 8021
Connected to 10.196.106.60.
220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
Name (10.196.106.60:asif): [hidden email]
331 Password required for [hidden email]
Password:
230 User [hidden email] logged in
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> ls
500 Illegal PORT command
ftp: bind: Address already in use
ftp> quit
221 Goodbye.


Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 12:01, Devon Ryan <[hidden email]> wrote:
Do you get an error of some sort?

--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg

On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <[hidden email]> wrote:
Hi Devon,

I tried to connect to Galaxy instance with FTP client WinSCP as follows:

Inline images 1

But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.




Regards,
_________________________________
Md. Rezaul Karim, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland

On 23 June 2017 at 11:05, Md. Rezaul Karim <[hidden email]> wrote:
Ok, thanks for the clarification. I will try again and get back to you.



On Jun 23, 2017 11:03 AM, "Devon Ryan" <[hidden email]> wrote:
If your user is an admin then yes. Each user can use their normal
login credentials.
--
Devon Ryan, Ph.D.
Email: [hidden email]
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany


On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
<[hidden email]> wrote:
> Did you mean using the admin user email id and the password?
>
> Regards,
> _________________________________
> Md. Rezaul Karim, BSc, MSc
> Researcher, INSIGHT Centre for Data Analytics
> National University of Ireland, Galway
> IDA Business Park, Dangan, Galway, Ireland
> Web: http://www.reza-analytics.eu/index.html
>
> On 23 June 2017 at 10:44, Devon Ryan <[hidden email]> wrote:
>>
>> You should be able to login with the email address and password that
>> you use for Galaxy then. That works for my instances at least.
>> --
>> Devon Ryan, Ph.D.
>> Email: [hidden email]
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> <[hidden email]> wrote:
>> > Hi Devon,
>> >
>> > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy
>> > is
>> > built on top of it (version 17.05). My system admin has provided me with
>> > the
>> > IP address of this DNS and when I issue the FTP command as follows:
>> >
>> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >
>> > It shows:
>> >
>> > Connected to 10.196.106.60.
>> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2]
>> > Name (10.196.106.60:asif):
>> >
>> > It seems ProFTPD is already configured. While running the container,
>> > port
>> > 8021 was mapped to 21.
>> >
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web: http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:30, Devon Ryan <[hidden email]> wrote:
>> >>
>> >> Are you using galaxy-docker-stable from Björn
>> >> (https://github.com/bgruening/docker-galaxy-stable) or did you make
>> >> your own dockerized-Galaxy version? Björn's runs proFTPd by default,
>> >> so if you're using it then ensure that's running in the container.
>> >>
>> >> Devon
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: [hidden email]
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> <[hidden email]> wrote:
>> >> > Dear All,
>> >> >
>> >> > I have Dockerized the Galaxy and it's running as a containerized
>> >> > application
>> >> > on the DC/OS server. It can be accessed at
>> >> > http://bioopenergalaxy.insight-centre.org/.
>> >> >
>> >> > However, I'm wondering how to FTP files on it. Please note that I
>> >> > have
>> >> > the
>> >> > following configuration on the galaxy.ini file:
>> >> >
>> >> > # This should point to a directory containing subdirectories matching
>> >> > users'
>> >> > identifier (defaults to e-mail), where Galaxy will look for files.
>> >> > ftp_upload_dir = /export/ftp
>> >> >
>> >> > # This should be the hostname of your FTP server, which will be
>> >> > provided
>> >> > to
>> >> > users in the help text.
>> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org
>> >> >
>> >> >
>> >> > Any help or pointer would be highly appreciated.
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web: http://www.reza-analytics.eu/index.html
>> >> >
>> >> > ___________________________________________________________
>> >> > Please keep all replies on the list by using "reply all"
>> >> > in your mail client.  To manage your subscriptions to this
>> >> > and other Galaxy lists, please use the interface at:
>> >> >   https://lists.galaxyproject.org/
>> >> >
>> >> > To search Galaxy mailing lists use the unified search at:
>> >> >   http://galaxyproject.org/search/
>> >
>> >
>
>





___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/