Issue when using a symbolyc link and try to import history

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Issue when using a symbolyc link and try to import history

SAPET, Frederic

Hello

 

I’m trying the latest Galaxy (git status gives me : # On branch release_16.07)

 

Within the database directory, I’ve create a symbolic link :

tmp ->  /tmp

 

But if this symbolic link is active, I’m unable to import an history using the “Import from file” link.

 

Here is the error :

 

galaxy.jobs ERROR 2016-08-24 16:04:24,266 Unable to cleanup job 127

Traceback (most recent call last):

  File "/softs/bioinfo/galaxy-prod/lib/galaxy/jobs/__init__.py", line 1440, in cleanup

    galaxy.tools.imp_exp.JobImportHistoryArchiveWrapper( self.app, self.job_id ).cleanup_after_job()

  File "/softs/bioinfo/galaxy-prod/lib/galaxy/tools/imp_exp/__init__.py", line 78, in cleanup_after_job

    history_attr_str = read_file_contents( history_attr_file_name )

  File "/softs/bioinfo/galaxy-prod/lib/galaxy/tools/imp_exp/__init__.py", line 44, in read_file_contents

    fp = open( file_path, 'rb' )

IOError: [Errno 2] No such file or directory: '/softs/bioinfo/galaxy-prod/database/tmp/tmp3SWdq_/history_attrs.txt'

 

 

If I remove the link and re-create a real directory, it works.

 

Fred

 


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