Issues with "bamtools split", running jobs don't show up in history (and fail after several hours)

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Issues with "bamtools split", running jobs don't show up in history (and fail after several hours)

Previti

Dear all,

I've been trying to properly install the "BAMTools split" tool in our local DKFZ-Galaxy instance, but it doesn't work properly.

The strange thing is that you can launch a bamtools splitter job on our cluster, but it never shows up in the history...until it fails with following

"error":

"tool error

An error occurred with this dataset:
Unable to finish job"

All versions (Galaxy, bamtools 2.4.0,samtools 1.3.1) are up to date and this is what I installed:

Repository                bamtools_split
Name:                      bamtools_split
Owner:                     devteam
Synopsis:                  Tool for splitting BAM files
Detailed description: Utility for splitting BAM files. It is based on BAMtools suite of tools by Derek Barnett.
Content homepage:  https://github.com/pezmaster31/bamtools

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/bamtools/bamtools_split

Revision: 2:e2c1b62e1db1

Thanks and best regards,

Christopher


--
Dr. Christopher Previti
Genomics and
Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4434

christopher.previti@...
www.dkfz.de

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

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