JBrowse failed to install

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Mic
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JBrowse failed to install

Mic
Hello,
I tried JBrowse from toolshed and testtoolshed to install, but in both cases it fails, because of xz ( testtoolshed.g2.bx.psu.edu/repos/iuc/package_xz_5_0_5/50c34f0ab0e4/package_xz_5_0_5 ):

Error downloading from URL
HTTP Error 403: Forbidden

How is it possible to fix it?

Thank you in advance.

Mic

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Re: JBrowse failed to install

Eric Rasche-2
Hi Mic,

Maintainer of the JBrowse tool here. The XZ developers removed downloads of their old packages (see the notice at the top of http://tukaani.org/xz/old.html), breaking the installation process. This should be fixed by the end of November.

Currently, the JBrowse package will likely fail to install for reasons other than XZ. There are numerous bugs in the initial release that I have not yet fixed, but I am working on an update to the JBrowse tool which should be out soon and will fix all of the installation bugs as well as provide some much needed features. Please feel free to file further issues against the IUC repository which hosts the tool (https://github.com/galaxyproject/tools-iuc/issues/) or email me personally.

Ciao,
Eric

On 11/08/2015 06:26 AM, Mic wrote:

> Hello,
> I tried JBrowse from toolshed and testtoolshed to install, but in both
> cases it fails, because of xz (
> /testtoolshed.g2.bx.psu.edu/repos/iuc/package_xz_5_0_5/50c34f0ab0e4/package_xz_5_0_5
> <http://testtoolshed.g2.bx.psu.edu/repos/iuc/package_xz_5_0_5/50c34f0ab0e4/package_xz_5_0_5>/
> ):
>
> /Error downloading from URL/
> /http://tukaani.org/xz/xz-5.0.5.tar.bz2:/
> /HTTP Error 403: Forbidden/
> /
> /
> How is it possible to fix it?
>
> Thank you in advance.
>
> Mic
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>

--
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
[hidden email]

___________________________________________________________
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Mic
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Re: JBrowse failed to install

Mic
Hi Eric,
Thank you for the update. I look forward to try the updated JBrowse package.

Best wishes,

Mic

On Sun, Nov 8, 2015 at 11:11 PM, Eric Rasche <[hidden email]> wrote:
Hi Mic,

Maintainer of the JBrowse tool here. The XZ developers removed downloads of their old packages (see the notice at the top of http://tukaani.org/xz/old.html), breaking the installation process. This should be fixed by the end of November.

Currently, the JBrowse package will likely fail to install for reasons other than XZ. There are numerous bugs in the initial release that I have not yet fixed, but I am working on an update to the JBrowse tool which should be out soon and will fix all of the installation bugs as well as provide some much needed features. Please feel free to file further issues against the IUC repository which hosts the tool (https://github.com/galaxyproject/tools-iuc/issues/) or email me personally.

Ciao,
Eric

On 11/08/2015 06:26 AM, Mic wrote:
> Hello,
> I tried JBrowse from toolshed and testtoolshed to install, but in both
> cases it fails, because of xz (
> /testtoolshed.g2.bx.psu.edu/repos/iuc/package_xz_5_0_5/50c34f0ab0e4/package_xz_5_0_5
> <http://testtoolshed.g2.bx.psu.edu/repos/iuc/package_xz_5_0_5/50c34f0ab0e4/package_xz_5_0_5>/
> ):
>
> /Error downloading from URL/
> /http://tukaani.org/xz/xz-5.0.5.tar.bz2:/
> /HTTP Error 403: Forbidden/
> /
> /
> How is it possible to fix it?
>
> Thank you in advance.
>
> Mic
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>

--
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
<a href="tel:404-692-2048" value="+14046922048">404-692-2048
[hidden email]



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/