Newline characters for txt files

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Newline characters for txt files

Lawrence, Cris W
I have observed that when I upload a file with CRLF line endings into Galaxy and then later download it, the endings have changed to UNIX (LF only).  I also observed that an uploaded file containing CR only line endings in Galaxy downloads to a file again with LF only line endings.  These file types are txt.  Just want to confirm - does Galaxy scrub line endings?

- Cris
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Re: Newline characters for txt files

John Chilton-4
Sorry for the delayed response on this - I just wanted to confirm that
yes Galaxy does this for uploaded files (if tools produce these line
endings we would not touch those). I believe this can be disabled by
clicking on the settings icon for a particular upload row in the
upload form and unchecking "Use POSIX standard".

-John

On Thu, Feb 9, 2017 at 8:58 AM, Lawrence, Cris W <[hidden email]> wrote:

> I have observed that when I upload a file with CRLF line endings into Galaxy and then later download it, the endings have changed to UNIX (LF only).  I also observed that an uploaded file containing CR only line endings in Galaxy downloads to a file again with LF only line endings.  These file types are txt.  Just want to confirm - does Galaxy scrub line endings?
>
> - Cris
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
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