OpenMS caused Error downloading from URL

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Mic
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OpenMS caused Error downloading from URL

Mic
Hello
I tried to install OpenMS (toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms), but I have got the following error:

 File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 128, in install_and_build_package_via_fabric
    tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict )
  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 86, in install_and_build_package
    initial_download=True )
  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step
    initial_download=initial_download )
  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 694, in execute_step
    dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums )
  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 187, in url_download
    raise Exception( err_msg )

Error downloading from URL
HTTP Error 404: Not Found

Thank you in advance.

Mic

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Re: OpenMS caused Error downloading from URL

Olivier CLAUDE

Hello Mic,

 

You should try to change the link in the tool_dependencies.xml of openMS with this link :

 

http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/

 

and then repair the package

 

regards,

 

Olivier.

 

 

 

De : galaxy-dev [mailto:[hidden email]] De la part de Mic
Envoyé : jeudi 5 novembre 2015 15:21
À : galaxy-dev <[hidden email]>
Objet : [galaxy-dev] OpenMS caused Error downloading from URL

 

Hello

I tried to install OpenMS (toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms), but I have got the following error:

 

 File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 128, in install_and_build_package_via_fabric

    tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict )

  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 86, in install_and_build_package

    initial_download=True )

  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step

    initial_download=initial_download )

  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 694, in execute_step

    dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums )

  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 187, in url_download

    raise Exception( err_msg )

 

Error downloading from URL

HTTP Error 404: Not Found

 

Thank you in advance.

 

Mic


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Re: OpenMS caused Error downloading from URL

Björn Grüning-3
Hi Mic and Olivier,

if there is broader interest in OpenMS please let me know.
We have new wrappers and new installation instructions here:

https://github.com/bgruening/galaxytools/tree/master/tools/openms

+ pre-compiled binaries as this takes ages to compile.
Cheers,
Bjoern

Am 05.11.2015 um 15:24 schrieb Olivier CLAUDE:

> Hello Mic,
>
>  
>
> You should try to change the link in the tool_dependencies.xml of openMS with this link :
>
>  
>
>  <http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/> http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/
>
>  
>
> and then repair the package
>
>  
>
> regards,
>
>  
>
> Olivier.
>
>  
>
>  
>
>  
>
> De : galaxy-dev [mailto:[hidden email]] De la part de Mic
> Envoyé : jeudi 5 novembre 2015 15:21
> À : galaxy-dev <[hidden email]>
> Objet : [galaxy-dev] OpenMS caused Error downloading from URL
>
>  
>
> Hello
>
> I tried to install OpenMS (toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms <http://toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms> ), but I have got the following error:
>
>  
>
>  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 128, in install_and_build_package_via_fabric
>
>     tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 86, in install_and_build_package
>
>     initial_download=True )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step
>
>     initial_download=initial_download )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 694, in execute_step
>
>     dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 187, in url_download
>
>     raise Exception( err_msg )
>
>  
>
> Error downloading from URL
>
> http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10.0/OpenMS-1.10.0.tar.gz:
>
> HTTP Error 404: Not Found
>
>  
>
> Thank you in advance.
>
>  
>
> Mic
>
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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Mic
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Re: OpenMS caused Error downloading from URL

Mic
Hello Bjoern and Oliver.
Thank you for the emails.

I changed to testtoolshed, but recieved the following error with openms 1.2 (testtoolshed.g2.bx.psu.edu/repos/bgruening/openms/ec62782f6c68/openms):

CMake Error at libraries.cmake/boost.cmake:122 (message):
  Performing configuration checks



      - gcc visibility           : yes
      - long double support      : yes
      - has_icu builds           : yes



  Component configuration:



      - chrono                   : not building
      - context                  : not building
      - date_time                : building
      - exception                : not building
      - filesystem               : not building
      - graph                    : not building
      - graph_parallel           : not building
      - iostreams                : building
      - locale                   : not building
      - math                     : building
      - mpi                      : not building
      - program_options          : not building
      - python                   : not building
      - random                   : not building
      - regex                    : building
      - serialization            : not building
      - signals                  : not building
      - system                   : not building
      - test                     : not building
      - thread                   : not building
      - timer                    : not building
      - wave                     : not building



  ...patience...

  ...patience...

  ...found 23291 targets...

  ...updating 11320 targets...

  common.mkdir bin.v2/libs/date_time

  common.mkdir bin.v2/libs/iostreams

  common.mkdir bin.v2/libs/math/build

  common.mkdir bin.v2/libs/math/config/gcc-4.8/release

  common.mkdir bin.v2/libs/regex/build/gcc-4.8/release

  common.mkdir bin.v2/libs/math/config/gcc-4.8/debug/link-static

  common.mkdir bin.v2/libs/regex/build/gcc-4.8/debug/link-static

  common.mkdir
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost


  common.copy
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  common.copy
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  common.copy
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  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/memory_order.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/intrusive_ptr.hpp


  common.copy
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  common.copy
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  common.copy
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  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/regex.h


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/type.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cstdlib.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/bind.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signals2.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/ref.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scoped_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/visit_each.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/assign.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/smart_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/asio.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/blank_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/weak_ptr.hpp


  common.copy
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  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/checked_delete.hpp


  common.copy
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  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/function.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signal.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/throw_exception.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/progress.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/none.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/make_shared.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/math_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/random.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/non_type.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/config.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/geometry.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/date_time.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/ratio.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/utility.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/parameter.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/circular_buffer_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/local_function.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/concept_check.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/next_prior.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/crc.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/tokenizer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/compressed_pair.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/variant.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/function_output_iterator.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/call_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/dynamic_bitset.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/python.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cerrno.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/preprocessor.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_index_container.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scope_exit.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/concept_archetype.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/foreach.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/type_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/rational.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/signals.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/io_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/unordered_map.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/regex_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/none_t.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/noncopyable.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/blank.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointee.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/mpi.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/flyweight.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/exception_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/integer_traits.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/aligned_storage.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cstdint.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/functional.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/multi_index_container_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/dynamic_bitset_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/get_pointer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/is_placeholder.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/array.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointer_to_other.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/scoped_ptr.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/spirit.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/shared_container_iterator.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/static_assert.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/filesystem.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/swap.hpp


  ...on 100th target...

  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/foreach_fwd.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/pointer_cast.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/version.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/cregex.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/integer.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/implicit_cast.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/iterator_adaptors.hpp


  common.copy
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  common.copy
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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/operators.hpp


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/enable_shared_from_this.hpp


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/include/boost/unordered_set.hpp


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  ...on 11200th target...

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  bin.v2/libs/iostreams/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi


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  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/runtime-link-static/threading-multi/gregorian


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  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_iostreams-mt-d.a


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  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian


  common.mkdir
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  common.mkdir
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  common.mkdir
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/gregorian


  gcc.compile.c++
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  gcc.compile.c++
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  common.mkdir
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  gcc.compile.c++
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  gcc.compile.c++
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  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/runtime-link-static/threading-multi/libboost_date_time-mt-sd.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-s.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-sd.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/threading-multi/libboost_date_time-mt-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt-d.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/gregorian/greg_month.o


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/gregorian/greg_month.o


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/libboost_date_time.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time.a


  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/release/link-static/threading-multi/libboost_date_time-mt.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-mt.a


  gcc.compile.c++
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/gregorian/greg_month.o


  ...on 11300th target...

  gcc.archive
  bin.v2/libs/date_time/build/gcc-4.8/debug/link-static/libboost_date_time-d.a


  common.copy
  /home/lorencm/galaxy/files_tmp/tmp-toolshed-mtd3RB5ND/OpenMS/contrib/lib/libboost_date_time-d.a


  ...failed updating 126 targets...

  ...skipped 18 targets...

  ...updated 11176 targets...

Call Stack (most recent call first):
  CMakeLists.txt:461 (OPENMS_CONTRIB_BUILD_BOOST)

What did I do wrong?

Thank you in advance.

Mic


On Fri, Nov 6, 2015 at 1:13 AM, Björn Grüning <[hidden email]> wrote:
Hi Mic and Olivier,

if there is broader interest in OpenMS please let me know.
We have new wrappers and new installation instructions here:

https://github.com/bgruening/galaxytools/tree/master/tools/openms

+ pre-compiled binaries as this takes ages to compile.
Cheers,
Bjoern

Am 05.11.2015 um 15:24 schrieb Olivier CLAUDE:
> Hello Mic,
>
>
>
> You should try to change the link in the tool_dependencies.xml of openMS with this link :
>
>
>
>  <http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/> http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz/
>
>
>
> and then repair the package
>
>
>
> regards,
>
>
>
> Olivier.
>
>
>
>
>
>
>
> De : galaxy-dev [mailto:[hidden email]] De la part de Mic
> Envoyé : jeudi 5 novembre 2015 15:21
> À : galaxy-dev <[hidden email]>
> Objet : [galaxy-dev] OpenMS caused Error downloading from URL
>
>
>
> Hello
>
> I tried to install OpenMS (toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms <http://toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms> ), but I have got the following error:
>
>
>
>  File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 128, in install_and_build_package_via_fabric
>
>     tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 86, in install_and_build_package
>
>     initial_download=True )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step
>
>     initial_download=initial_download )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 694, in execute_step
>
>     dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums )
>
>   File "/home/lorencm/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 187, in url_download
>
>     raise Exception( err_msg )
>
>
>
> Error downloading from URL
>
> http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10.0/OpenMS-1.10.0.tar.gz:
>
> HTTP Error 404: Not Found
>
>
>
> Thank you in advance.
>
>
>
> Mic
>
>
>
>
> ___________________________________________________________
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