Query

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Query

유창혁
Dear Sir,

I used your "Convert Format" from gff file of NCBI.
but I encounter the following message.
What can I do?

Best regards,
Chang-Hyuk Yoo.
Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.
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Re: Query

Vipin TS
Hi Chang-Hyuk, 

Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.   

Vipin | Rätsch Lab

On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 <[hidden email]> wrote:
Dear Sir,

I used your "Convert Format" from gff file of NCBI.
but I encounter the following message.
What can I do?

Best regards,
Chang-Hyuk Yoo.
Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.

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Re: Query

유창혁
Dear Sir,

that is all of error message.
I attached the file to be tried.

best regards,
Chang-Hyuk Yoo.

2016-02-25 오전 4:13에 Vipin TS 이(가) 쓴 글:
Hi Chang-Hyuk, 

Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.   

Vipin | Rätsch Lab

On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 <[hidden email]> wrote:
Dear Sir,

I used your "Convert Format" from gff file of NCBI.
but I encounter the following message.
What can I do?

Best regards,
Chang-Hyuk Yoo.
Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.

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GCF_000005845.2_ASM584v2_genomic.gff (3M) Download Attachment
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Re: Query

Daniel Blankenberg
Hi Chang-Hyuk,


If you click on the bug icon for your error'd dataset you should be able to get the full traceback.


Thanks for using Galaxy,


Dan



Dear Sir,

that is all of error message.
I attached the file to be tried.

best regards,
Chang-Hyuk Yoo.

2016-02-25 오전 4:13에 Vipin TS 이(가) 쓴 글:
Hi Chang-Hyuk, 

Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.   

Vipin | Rätsch Lab

On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 <[hidden email]> wrote:
Dear Sir,

I used your "Convert Format" from gff file of NCBI.
but I encounter the following message.
What can I do?

Best regards,
Chang-Hyuk Yoo.
Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.

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<GCF_000005845.2_ASM584v2_genomic.gff>___________________________________________________________
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___________________________________________________________
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