Questions about Whole Exome Sequencing in Galaxy

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Questions about Whole Exome Sequencing in Galaxy

Jiadi Xu
To Whom It May Concern,

This is Jiadi from University of Illinois at Chicago. I am trying do analyze the whole exome sequencing data in Galaxy. The data I have is FASTQ file from Illumins Hiseq2000, 18.5 GB. I am running the FASTQ Groomer analysis for already two days, but it has not finished yet. How long does it take for the groomer process in Galaxy? Am I using the right analysis for FASTQ? 

In addition, I would like to ask if there is any pipeline or refined guideline for the whole exam sequencing data analysis in Galaxy, especially for FASTQ files. 

Thank you so much!
Jiadi 


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