Queueing system and job parameters

classic Classic list List threaded Threaded
4 messages Options
| Threaded
Open this post in threaded view
|

Queueing system and job parameters

Velayutham, Prakash (Prakash)
Hi,

I have a local Galaxy instance. I have tied the server to a local HPC and we use LSF for scheduling jobs. I was wondering how a user can submit a job from Galaxy while specifying a wall time and memory requirements for a job… Is this doable?

Thanks,
Prakash

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Queueing system and job parameters

Nate Coraor (nate@bx.psu.edu)

On Wed, Sep 10, 2014 at 8:57 PM, Velayutham, Prakash (Prakash) <[hidden email]> wrote:
Hi,

I have a local Galaxy instance. I have tied the server to a local HPC and we use LSF for scheduling jobs. I was wondering how a user can submit a job from Galaxy while specifying a wall time and memory requirements for a job… Is this doable?

Thanks,
Prakash

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Queueing system and job parameters

Velayutham, Prakash (Prakash)
Hi Nate,

Can you point me to the documentation that explains this in more detail? What version of Galaxy supports this? My build is at least 3 months old, probably even more.

Thanks,
Prakash

On Sep 11, 2014, at 1:17 PM, Nate Coraor <[hidden email]> wrote:


On Wed, Sep 10, 2014 at 8:57 PM, Velayutham, Prakash (Prakash) <[hidden email]> wrote:
Hi,

I have a local Galaxy instance. I have tied the server to a local HPC and we use LSF for scheduling jobs. I was wondering how a user can submit a job from Galaxy while specifying a wall time and memory requirements for a job… Is this doable?

Thanks,
Prakash

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Queueing system and job parameters

Nate Coraor (nate@bx.psu.edu)
Hi Prakash,

At this point, the documentation is the examples in job_resource_params_conf.xml.sample and job_conf.xml.sample. This code was in the August 2014 release, so you'll need to upgrade to use it.

Here is the commit, which shows the changes to job_conf.xml.sample:


--nate

On Sun, Sep 14, 2014 at 8:34 AM, Velayutham, Prakash (Prakash) <[hidden email]> wrote:
Hi Nate,

Can you point me to the documentation that explains this in more detail? What version of Galaxy supports this? My build is at least 3 months old, probably even more.

Thanks,
Prakash

On Sep 11, 2014, at 1:17 PM, Nate Coraor <[hidden email]> wrote:


On Wed, Sep 10, 2014 at 8:57 PM, Velayutham, Prakash (Prakash) <[hidden email]> wrote:
Hi,

I have a local Galaxy instance. I have tied the server to a local HPC and we use LSF for scheduling jobs. I was wondering how a user can submit a job from Galaxy while specifying a wall time and memory requirements for a job… Is this doable?

Thanks,
Prakash

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/