Re: [galaxy-bugs] Job running problems

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Re: [galaxy-bugs] Job running problems

Jennifer Hillman-Jackson
Hi David,

If you are running the work at a public Galaxy server, the queue times
for larger compute-intensive tools are usually a bit longer than for
simpler tools.

The best strategy is to queue jobs up and allow those to fully process. If
you delete and rerun, that will place the new job back at the end of the
queue again, further extending wait time. The only reason to rerun is if
you already know there is a problem with the inputs that will likely lead
to a job failure (or results you don't want).

For urgent or time-sensitive work, or if you'd just like to have more quota
space and not compete with others for common public resources, consider
setting up your own Galaxy server. The GVL version of Cloudman is a popular
choice but there are many others. Please see:



Jennifer Hillman-Jackson
Galaxy Application Support

On Mon, Aug 3, 2020 at 10:47 AM Xiaoshen Zhang <[hidden email]>

> Dear Galaxy team,
> Recently, I have been running TRINITY for RNA-seq data analysis, but the
> “my history” status always display the job is waiting to be run (the color
> never changed). When I implemented some analyses on galaxy, ONLY this
> method displayed “job waiting to be run” and nothing happened.
> After trying for several times and everything, I suppose something wrong
> with my account or the TRINITY method.
> Hope you can kindly fix this problem. Thanks for all the efforts you have
> been made. My account is exactly this email address.
> Details for TRINITY: (
> )
> Best Regard,
> David
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