Re: galaxy-dev Digest, Vol 96, Issue 14

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Re: galaxy-dev Digest, Vol 96, Issue 14

xlwang
Hello,
when i run my galaxy instance type:
    $ sh run.sh
I get some error like this:
    Traceback (most recent call last):
  File "/export/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 38, in app_factory
    from galaxy.app import UniverseApplication
  File "/export/galaxy-dist/lib/galaxy/app.py", line 21, in <module>
    from galaxy.queue_worker import GalaxyQueueWorker
  File "/export/galaxy-dist/lib/galaxy/queue_worker.py", line 10, in <module>
    import galaxy.queues
  File "/export/galaxy-dist/lib/galaxy/queues.py", line 17, in <module>
    from kombu import Exchange, Queue
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/__init__.py", line 67, in __getattr__
    module = __import__(object_origins[name], None, None, [name])
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/entity.py", line 10, in <module>
    from .abstract import MaybeChannelBound
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/abstract.py", line 12, in <module>
    from .connection import maybe_channel
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/connection.py", line 24, in <module>
    from kombu import exceptions
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/exceptions.py", line 12, in <module>
    from amqp import ChannelError, ConnectionError, ResourceError
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/__init__.py", line 32, in <module>
    from .basic_message import Message      # noqa
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/basic_message.py", line 19, in <module>
    from .serialization import GenericContent
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/serialization.py", line 33, in <module>
    from .five import int_types, long_t, string, string_t, items
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/five.py", line 171, in <module>
    librt = ctypes.CDLL('librt.so.1', use_errno=True)
TypeError: __init__() got an unexpected keyword argument 'use_errno'  
 
I have no idea why this happend. How can I fix it?



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Re: galaxy-dev Digest, Vol 96, Issue 14

Dannon Baker-2
This is a new one for me.  What configuration are you using for both your 'database_connection', and the 'amqp_internal_connection' in your universe_wsgi.ini?


On Fri, Jun 13, 2014 at 12:29 AM, xlwang <[hidden email]> wrote:
Hello,
when i run my galaxy instance type:
    $ sh run.sh
I get some error like this:
    Traceback (most recent call last):
  File "/export/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 38, in app_factory
    from galaxy.app import UniverseApplication
  File "/export/galaxy-dist/lib/galaxy/app.py", line 21, in <module>
    from galaxy.queue_worker import GalaxyQueueWorker
  File "/export/galaxy-dist/lib/galaxy/queue_worker.py", line 10, in <module>
    import galaxy.queues
  File "/export/galaxy-dist/lib/galaxy/queues.py", line 17, in <module>
    from kombu import Exchange, Queue
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/__init__.py", line 67, in __getattr__
    module = __import__(object_origins[name], None, None, [name])
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/entity.py", line 10, in <module>
    from .abstract import MaybeChannelBound
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/abstract.py", line 12, in <module>
    from .connection import maybe_channel
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/connection.py", line 24, in <module>
    from kombu import exceptions
  File "/export/galaxy-dist/eggs/kombu-3.0.13-py2.7.egg/kombu/exceptions.py", line 12, in <module>
    from amqp import ChannelError, ConnectionError, ResourceError
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/__init__.py", line 32, in <module>
    from .basic_message import Message      # noqa
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/basic_message.py", line 19, in <module>
    from .serialization import GenericContent
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/serialization.py", line 33, in <module>
    from .five import int_types, long_t, string, string_t, items
  File "/export/galaxy-dist/eggs/amqp-1.4.5-py2.7.egg/amqp/five.py", line 171, in <module>
    librt = ctypes.CDLL('librt.so.1', use_errno=True)
TypeError: __init__() got an unexpected keyword argument 'use_errno'  
 
I have no idea why this happend. How can I fix it?



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/