Rg: Galaxy Version

classic Classic list List threaded Threaded
6 messages Options
| Threaded
Open this post in threaded view
|

Rg: Galaxy Version

Anamika Singh
Dear galaxy team,

I am using galaxy platform (old version) in Linux OS which was not installed by me. I would like to know 'how to check what is the galaxy version installed currently in my system.

Regards

--
Anamika

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Rg: Galaxy Version

Rempel, Eugen
Dear Anamika,

you can check the version in your browser using the link

$link_to_your_galaxy/api/version.

Example for the usegalaxy.org<http://usegalaxy.org>:

https://usegalaxy.org/api/version

Best,

Eugen


On 08 Mar 2017, at 11:36, Anamika Singh <[hidden email]<mailto:[hidden email]>> wrote:

Dear galaxy team,

I am using galaxy platform (old version) in Linux OS which was not installed by me. I would like to know 'how to check what is the galaxy version installed currently in my system.

Regards

--
Anamika
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Rg: Galaxy Version

Peter Cock
In reply to this post by Anamika Singh
Galaxy was originally distributed via the mercurial (hg) version
control system, later the git version control system.

Try this (which will work on a very old Galaxy using hg),

$ hg log | head
changeset:   17125:e837a68e8d14
tag:         tip
parent:      17121:7a4e3a661a76
parent:      17124:46a4ef8850b5
user:        Nate Coraor <[hidden email]>
date:        Fri May 15 15:21:34 2015 -0400
summary:     Merge stable to default
...

If that fails, try this which will work on a Galaxy distributed with git:

$ git log | head
commit cbd527b9a4671c7abe9a22cf69e869b5d2de858a
Merge: 33dec01 d0f39ce
Author: Nicola Soranzo <[hidden email]>
Date:   Wed Dec 7 20:35:40 2016 +0000

    Merge branch 'release_16.10' into dev

    Conflicts:
            static/scripts/bundled/analysis.bundled.js
            static/scripts/bundled/analysis.bundled.js.map
...


If it isn't clear from the commit message, you can then match those commits
to the relevant repository and hopefully work it out, here those were:

https://bitbucket.org/galaxy/galaxy-central/commits/e837a68e8d14

and

https://github.com/galaxyproject/galaxy/commits/cbd527b9a4671c7abe9a22cf69e869b5d2de858a

If neither git nor hg work, then perhaps your Galaxy was installed via a
different route - and that will likely complicate updating it.

Peter


On Wed, Mar 8, 2017 at 10:36 AM, Anamika Singh <[hidden email]> wrote:

> Dear galaxy team,
>
> I am using galaxy platform (old version) in Linux OS which was not installed
> by me. I would like to know 'how to check what is the galaxy version
> installed currently in my system.
>
> Regards
>
> --
> Anamika
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Rg: Galaxy Version

Martin Čech
Hi Anamika, 

adding a detail to Peter's excellent answer:

For newer versions of Galaxy (while it is running) you can go to the url `<a href="http://your.galaxy.com/api/version`">your.galaxy.com/api/version` to learn the release of Galaxy you have.

Thanks for using Galaxy,

Martin

On Wed, Mar 8, 2017 at 7:39 AM Peter Cock <[hidden email]> wrote:
Galaxy was originally distributed via the mercurial (hg) version
control system, later the git version control system.

Try this (which will work on a very old Galaxy using hg),

$ hg log | head
changeset:   17125:e837a68e8d14
tag:         tip
parent:      17121:7a4e3a661a76
parent:      17124:46a4ef8850b5
user:        Nate Coraor <[hidden email]>
date:        Fri May 15 15:21:34 2015 -0400
summary:     Merge stable to default
...

If that fails, try this which will work on a Galaxy distributed with git:

$ git log | head
commit cbd527b9a4671c7abe9a22cf69e869b5d2de858a
Merge: 33dec01 d0f39ce
Author: Nicola Soranzo <[hidden email]>
Date:   Wed Dec 7 20:35:40 2016 +0000

    Merge branch 'release_16.10' into dev

    Conflicts:
            static/scripts/bundled/analysis.bundled.js
            static/scripts/bundled/analysis.bundled.js.map
...


If it isn't clear from the commit message, you can then match those commits
to the relevant repository and hopefully work it out, here those were:

https://bitbucket.org/galaxy/galaxy-central/commits/e837a68e8d14

and

https://github.com/galaxyproject/galaxy/commits/cbd527b9a4671c7abe9a22cf69e869b5d2de858a

If neither git nor hg work, then perhaps your Galaxy was installed via a
different route - and that will likely complicate updating it.

Peter


On Wed, Mar 8, 2017 at 10:36 AM, Anamika Singh <[hidden email]> wrote:
> Dear galaxy team,
>
> I am using galaxy platform (old version) in Linux OS which was not installed
> by me. I would like to know 'how to check what is the galaxy version
> installed currently in my system.
>
> Regards
>
> --
> Anamika
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Rg: Galaxy Version

Peter Cock
Thanks Martin & Eugen,

That's much easier (although Anamika will likely need to check if
their Galaxy was setup using hg or git anyway for updating it).

I'm not sure when it was introduced, but its been a while as even
the older Galaxy instance in my example under hg gives:

{"version_major": "15.05"}

Regards,

Peter


On Wed, Mar 8, 2017 at 2:06 PM, Martin Čech <[hidden email]> wrote:

> Hi Anamika,
>
> adding a detail to Peter's excellent answer:
>
> For newer versions of Galaxy (while it is running) you can go to the url
> `your.galaxy.com/api/version` to learn the release of Galaxy you have.
>
> Thanks for using Galaxy,
>
> Martin
>
> On Wed, Mar 8, 2017 at 7:39 AM Peter Cock <[hidden email]> wrote:
>>
>> Galaxy was originally distributed via the mercurial (hg) version
>> control system, later the git version control system.
>>
>> Try this (which will work on a very old Galaxy using hg),
>>
>> $ hg log | head
>> changeset:   17125:e837a68e8d14
>> tag:         tip
>> parent:      17121:7a4e3a661a76
>> parent:      17124:46a4ef8850b5
>> user:        Nate Coraor <[hidden email]>
>> date:        Fri May 15 15:21:34 2015 -0400
>> summary:     Merge stable to default
>> ...
>>
>> If that fails, try this which will work on a Galaxy distributed with git:
>>
>> $ git log | head
>> commit cbd527b9a4671c7abe9a22cf69e869b5d2de858a
>> Merge: 33dec01 d0f39ce
>> Author: Nicola Soranzo <[hidden email]>
>> Date:   Wed Dec 7 20:35:40 2016 +0000
>>
>>     Merge branch 'release_16.10' into dev
>>
>>     Conflicts:
>>             static/scripts/bundled/analysis.bundled.js
>>             static/scripts/bundled/analysis.bundled.js.map
>> ...
>>
>>
>> If it isn't clear from the commit message, you can then match those
>> commits
>> to the relevant repository and hopefully work it out, here those were:
>>
>> https://bitbucket.org/galaxy/galaxy-central/commits/e837a68e8d14
>>
>> and
>>
>>
>> https://github.com/galaxyproject/galaxy/commits/cbd527b9a4671c7abe9a22cf69e869b5d2de858a
>>
>> If neither git nor hg work, then perhaps your Galaxy was installed via a
>> different route - and that will likely complicate updating it.
>>
>> Peter
>>
>>
>> On Wed, Mar 8, 2017 at 10:36 AM, Anamika Singh <[hidden email]>
>> wrote:
>> > Dear galaxy team,
>> >
>> > I am using galaxy platform (old version) in Linux OS which was not
>> > installed
>> > by me. I would like to know 'how to check what is the galaxy version
>> > installed currently in my system.
>> >
>> > Regards
>> >
>> > --
>> > Anamika
>> >
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/mailinglists/
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
| Threaded
Open this post in threaded view
|

Re: Rg: Galaxy Version

Haiqing Li
In reply to this post by Anamika Singh

Check lib/galaxy/version.py

 

Bests,

 

Haiqing

 

From: galaxy-dev [mailto:[hidden email]] On Behalf Of Anamika Singh
Sent: Wednesday, March 08, 2017 2:37 AM
To: [hidden email]
Subject: [galaxy-dev] Rg: Galaxy Version

 

Dear galaxy team,

I am using galaxy platform (old version) in Linux OS which was not installed by me. I would like to know 'how to check what is the galaxy version installed currently in my system.

Regards


--

Anamika


---------------------------------------------------------------------
-SECURITY/CONFIDENTIALITY WARNING-
This message (and any attachments) are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. (LCP301)
---------------------------------------------------------------------


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
Bioinformatics and Research IT
Beckman Research Institute
City of Hope Medical Center