Sample Tracking Feature in Galaxy

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Sample Tracking Feature in Galaxy

Hakeem Almabrazi-2

Hi,

 

I am trying to see if we can use Tracking Sample Features in Galaxy to collect some data from the technisians.  However, I have no idea where to start.  I guess I do not know how to set it up in Galaxy.

 

Here is what I have done so far. From the admin panel, I create two forms; Sequencing Request Form, and a Sequencing Sample Form

When I want to create a new Sequence Request Type it tells me that I need the two forms “Creating a new request type requires two form definitions, a Sequencing Request Form, and a Sequencing Sample Form, which must be created first. Click the Create new form button to create them.”  However, I have already created them.  The Sequence Request Form creator does not see that.How to go behind this point? 

 

Also from some online tutorials, there is a menu called “Lab” should show up in the main menu of Galaxy.  I do not see that in mine.  Is there something that I need to setup here.

 

I appreciate your help.

 

Regards

 

Disclaimer: This email and its attachments may be confidential and are intended solely for the use of the individual to whom it is addressed. If you are not the intended recipient, any reading, printing, storage, disclosure, copying or any other action taken in respect of this e-mail is prohibited and may be unlawful. If you are not the intended recipient, please notify the sender immediately by using the reply function and then permanently delete what you have received. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Sidra Medical and Research Center.
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Re: Sample Tracking Feature in Galaxy

Hans-Rudolf Hotz
Hi Hakeem

I am not an expert on the Sample Tracking, but as far as I remember, you
need to log in as an 'admin' in order to get the 'Lab' link in the
Galaxy top menu.

Regards, Hans-Rudolf


On 08/04/2015 01:06 PM, Hakeem Almabrazi wrote:

> Hi,
>
> I am trying to see if we can use Tracking Sample Features in Galaxy to
> collect some data from the technisians.  However, I have no idea where
> to start.  I guess I do not know how to set it up in Galaxy.
>
> Here is what I have done so far. From the admin panel, I create two
> forms;*Sequencing Request Form*, and a*Sequencing Sample Form*
>
> When I want to create a new Sequence Request Type it tells me that I
> need the two forms “Creating a new request type requires two form
> definitions, a*Sequencing Request Form*, and a*Sequencing Sample Form*,
> which must be created first. Click the*Create new form*button to create
> them.”  However, I have already created them.  The Sequence Request Form
> creator does not see that.How to go behind this point?
>
> Also from some online tutorials, there is a menu called “Lab” should
> show up in the main menu of Galaxy.  I do not see that in mine.  Is
> there something that I need to setup here.
>
> I appreciate your help.
>
> Regards
>
> Disclaimer: This email and its attachments may be confidential and are
> intended solely for the use of the individual to whom it is addressed.
> If you are not the intended recipient, any reading, printing, storage,
> disclosure, copying or any other action taken in respect of this e-mail
> is prohibited and may be unlawful. If you are not the intended
> recipient, please notify the sender immediately by using the reply
> function and then permanently delete what you have received. Any views
> or opinions expressed are solely those of the author and do not
> necessarily represent those of Sidra Medical and Research Center.
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>    https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>    http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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Re: Sample Tracking Feature in Galaxy

Hans-Rudolf Hotz
sorry, ignore my suggestion in my previous mail - I was wrong

Hans-Rudolf

On 08/04/2015 01:42 PM, Hans-Rudolf Hotz wrote:

> Hi Hakeem
>
> I am not an expert on the Sample Tracking, but as far as I remember, you
> need to log in as an 'admin' in order to get the 'Lab' link in the
> Galaxy top menu.
>
> Regards, Hans-Rudolf
>
>
> On 08/04/2015 01:06 PM, Hakeem Almabrazi wrote:
>> Hi,
>>
>> I am trying to see if we can use Tracking Sample Features in Galaxy to
>> collect some data from the technisians.  However, I have no idea where
>> to start.  I guess I do not know how to set it up in Galaxy.
>>
>> Here is what I have done so far. From the admin panel, I create two
>> forms;*Sequencing Request Form*, and a*Sequencing Sample Form*
>>
>> When I want to create a new Sequence Request Type it tells me that I
>> need the two forms “Creating a new request type requires two form
>> definitions, a*Sequencing Request Form*, and a*Sequencing Sample Form*,
>> which must be created first. Click the*Create new form*button to create
>> them.”  However, I have already created them.  The Sequence Request Form
>> creator does not see that.How to go behind this point?
>>
>> Also from some online tutorials, there is a menu called “Lab” should
>> show up in the main menu of Galaxy.  I do not see that in mine.  Is
>> there something that I need to setup here.
>>
>> I appreciate your help.
>>
>> Regards
>>
>> Disclaimer: This email and its attachments may be confidential and are
>> intended solely for the use of the individual to whom it is addressed.
>> If you are not the intended recipient, any reading, printing, storage,
>> disclosure, copying or any other action taken in respect of this e-mail
>> is prohibited and may be unlawful. If you are not the intended
>> recipient, please notify the sender immediately by using the reply
>> function and then permanently delete what you have received. Any views
>> or opinions expressed are solely those of the author and do not
>> necessarily represent those of Sidra Medical and Research Center.
>>
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>    https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>    http://galaxyproject.org/search/mailinglists/
>>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Re: Sample Tracking Feature in Galaxy

Hakeem Almabrazi-2
Thank you Hans,

Yes I have been doing that but still I do not see that menu.
hakeem

-----Original Message-----
From: Hans-Rudolf Hotz [mailto:[hidden email]]
Sent: Tuesday, August 04, 2015 2:47 PM
To: Hakeem Almabrazi; [hidden email]
Subject: Re: [galaxy-dev] Sample Tracking Feature in Galaxy

sorry, ignore my suggestion in my previous mail - I was wrong

Hans-Rudolf

On 08/04/2015 01:42 PM, Hans-Rudolf Hotz wrote:

> Hi Hakeem
>
> I am not an expert on the Sample Tracking, but as far as I remember,
> you need to log in as an 'admin' in order to get the 'Lab' link in the
> Galaxy top menu.
>
> Regards, Hans-Rudolf
>
>
> On 08/04/2015 01:06 PM, Hakeem Almabrazi wrote:
>> Hi,
>>
>> I am trying to see if we can use Tracking Sample Features in Galaxy
>> to collect some data from the technisians.  However, I have no idea
>> where to start.  I guess I do not know how to set it up in Galaxy.
>>
>> Here is what I have done so far. From the admin panel, I create two
>> forms;*Sequencing Request Form*, and a*Sequencing Sample Form*
>>
>> When I want to create a new Sequence Request Type it tells me that I
>> need the two forms “Creating a new request type requires two form
>> definitions, a*Sequencing Request Form*, and a*Sequencing Sample
>> Form*, which must be created first. Click the*Create new form*button
>> to create them.”  However, I have already created them.  The Sequence
>> Request Form creator does not see that.How to go behind this point?
>>
>> Also from some online tutorials, there is a menu called “Lab” should
>> show up in the main menu of Galaxy.  I do not see that in mine.  Is
>> there something that I need to setup here.
>>
>> I appreciate your help.
>>
>> Regards
>>
>> Disclaimer: This email and its attachments may be confidential and
>> are intended solely for the use of the individual to whom it is addressed.
>> If you are not the intended recipient, any reading, printing,
>> storage, disclosure, copying or any other action taken in respect of
>> this e-mail is prohibited and may be unlawful. If you are not the
>> intended recipient, please notify the sender immediately by using the
>> reply function and then permanently delete what you have received.
>> Any views or opinions expressed are solely those of the author and do
>> not necessarily represent those of Sidra Medical and Research Center.
>>
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this and other
>> Galaxy lists, please use the interface at:
>>    https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>    http://galaxyproject.org/search/mailinglists/
>>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this and other
> Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
Disclaimer: This email and its attachments may be confidential and are intended solely for the use of the individual to whom it is addressed. If you are not the intended recipient, any reading, printing, storage, disclosure, copying or any other action taken in respect of this e-mail is prohibited and may be unlawful. If you are not the intended recipient, please notify the sender immediately by using the reply function and then permanently delete what you have received. Any views or opinions expressed are solely those of the author and do not necessarily represent those of Sidra Medical and Research Center.
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/