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Search Tool Shed

Matthias Bernt
Dear mailing list,

What is the expected behavior if I click in the Admin area under "Search
Tool Shed" on the "Galaxy Main Tool Shed" button (or any of the Browse
.. or Search .. actions that are available via the black triangle submenu)?

I remember that a new tab with the corresponding Tool Shed page opened
in the browser.

This is currently not happening in my installation. What could be the
problem? As a work around I can trigger the Browse action via right
click and "open link in new tab".

As far as I can see this is not a JavaScript problem.

Best,
Matthias



--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

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Re: Search Tool Shed

Martin Čech
Hi Matthias,

it is supposed to open an iframe in the right panel with view of MTS categories for browsing. Do you see a warning icon in the right of your browser's URL bar? I think I saw this before when there was https/https mismatch. How does your config/tool_sheds_conf.xml look like? Do you see any errors/warnings in the browser's JS console?

Martin



On Wed, Mar 8, 2017 at 9:56 AM Matthias Bernt <[hidden email]> wrote:
Dear mailing list,

What is the expected behavior if I click in the Admin area under "Search
Tool Shed" on the "Galaxy Main Tool Shed" button (or any of the Browse
.. or Search .. actions that are available via the black triangle submenu)?

I remember that a new tab with the corresponding Tool Shed page opened
in the browser.

This is currently not happening in my installation. What could be the
problem? As a work around I can trigger the Browse action via right
click and "open link in new tab".

As far as I can see this is not a JavaScript problem.

Best,
Matthias



--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone <a href="tel:+49%20341%20235482296" value="+49341235482296" class="gmail_msg" target="_blank">+49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Search Tool Shed

Matthias Bernt
Hi Martin,

thanks for your reply. The reason was the Privacy Badger browser plugin.
Might it be that data is exchanged with the toolshed page?

Anyway, I disabled the plugin and the page works.

Best,
Matthias

On 08.03.2017 16:20, Martin Čech wrote:

> Hi Matthias,
>
> it is supposed to open an iframe in the right panel with view of MTS
> categories for browsing. Do you see a warning icon in the right of your
> browser's URL bar? I think I saw this before when there was https/https
> mismatch. How does your config/tool_sheds_conf.xml look like? Do you see
> any errors/warnings in the browser's JS console?
>
> Martin
>
>
>
> On Wed, Mar 8, 2017 at 9:56 AM Matthias Bernt <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Dear mailing list,
>
>     What is the expected behavior if I click in the Admin area under "Search
>     Tool Shed" on the "Galaxy Main Tool Shed" button (or any of the Browse
>     .. or Search .. actions that are available via the black triangle
>     submenu)?
>
>     I remember that a new tab with the corresponding Tool Shed page opened
>     in the browser.
>
>     This is currently not happening in my installation. What could be the
>     problem? As a work around I can trigger the Browse action via right
>     click and "open link in new tab".
>
>     As far as I can see this is not a JavaScript problem.
>
>     Best,
>     Matthias
>
>
>
>     --
>
>     -------------------------------------------
>     Matthias Bernt
>     Bioinformatics Service
>     Molekulare Systembiologie (MOLSYB)
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone +49 341 235 482296 <tel:+49%20341%20235482296>,
>     [hidden email] <mailto:[hidden email]>, www.ufz.de <http://www.ufz.de>
>
>     Sitz der Gesellschaft/Registered Office: Leipzig
>     Registergericht/Registration Office: Amtsgericht Leipzig
>     Handelsregister Nr./Trade Register Nr.: B 4703
>     Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>     MinDirig Wilfried Kraus
>     Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>     Prof. Dr. Dr. h.c. Georg Teutsch
>     Administrative Geschäftsführerin/ Administrative Managing Director:
>     Prof. Dr. Heike Graßmann
>     -------------------------------------------
>
>     ___________________________________________________________
>     Please keep all replies on the list by using "reply all"
>     in your mail client.  To manage your subscriptions to this
>     and other Galaxy lists, please use the interface at:
>       https://lists.galaxyproject.org/
>
>     To search Galaxy mailing lists use the unified search at:
>       http://galaxyproject.org/search/mailinglists/
>
--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

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Re: Search Tool Shed

Martin Čech
The Tool Shed itself is loaded into the iframe (served from a different domain) - that is why some more strict security settings have problems with it.

M.

On Thu, Mar 9, 2017 at 2:52 PM Matthias Bernt <[hidden email]> wrote:
Hi Martin,

thanks for your reply. The reason was the Privacy Badger browser plugin.
Might it be that data is exchanged with the toolshed page?

Anyway, I disabled the plugin and the page works.

Best,
Matthias

On 08.03.2017 16:20, Martin Čech wrote:
> Hi Matthias,
>
> it is supposed to open an iframe in the right panel with view of MTS
> categories for browsing. Do you see a warning icon in the right of your
> browser's URL bar? I think I saw this before when there was https/https
> mismatch. How does your config/tool_sheds_conf.xml look like? Do you see
> any errors/warnings in the browser's JS console?
>
> Martin
>
>
>
> On Wed, Mar 8, 2017 at 9:56 AM Matthias Bernt <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Dear mailing list,
>
>     What is the expected behavior if I click in the Admin area under "Search
>     Tool Shed" on the "Galaxy Main Tool Shed" button (or any of the Browse
>     .. or Search .. actions that are available via the black triangle
>     submenu)?
>
>     I remember that a new tab with the corresponding Tool Shed page opened
>     in the browser.
>
>     This is currently not happening in my installation. What could be the
>     problem? As a work around I can trigger the Browse action via right
>     click and "open link in new tab".
>
>     As far as I can see this is not a JavaScript problem.
>
>     Best,
>     Matthias
>
>
>
>     --
>
>     -------------------------------------------
>     Matthias Bernt
>     Bioinformatics Service
>     Molekulare Systembiologie (MOLSYB)
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone <a href="tel:+49%20341%20235482296" value="+49341235482296" class="gmail_msg" target="_blank">+49 341 235 482296 <tel:+49%20341%20235482296>,
>     [hidden email] <mailto:[hidden email]>, www.ufz.de <http://www.ufz.de>
>
>     Sitz der Gesellschaft/Registered Office: Leipzig
>     Registergericht/Registration Office: Amtsgericht Leipzig
>     Handelsregister Nr./Trade Register Nr.: B 4703
>     Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>     MinDirig Wilfried Kraus
>     Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>     Prof. Dr. Dr. h.c. Georg Teutsch
>     Administrative Geschäftsführerin/ Administrative Managing Director:
>     Prof. Dr. Heike Graßmann
>     -------------------------------------------
>
>     ___________________________________________________________
>     Please keep all replies on the list by using "reply all"
>     in your mail client.  To manage your subscriptions to this
>     and other Galaxy lists, please use the interface at:
>       https://lists.galaxyproject.org/
>
>     To search Galaxy mailing lists use the unified search at:
>       http://galaxyproject.org/search/mailinglists/
>

--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone <a href="tel:+49%20341%20235482296" value="+49341235482296" class="gmail_msg" target="_blank">+49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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