Setup Galaxy with Son of Grid

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Setup Galaxy with Son of Grid

Vipul Patel
Hi,

I try to setup a new galaxy env by following the wiki (used nginx, uwsgi)
Everything is actually working but if I try to add the grid engine, my jobs will not be fired...

I already found this post and try to adept it.. but well it did not helped.
http://dev.list.galaxyproject.org/quot-This-job-is-waiting-to-run-quot-td4666551.html

The grid engine it self runs. Is there any way to observe on the fly what actually happens. All I see are just that the galaxy server started. Currently I have no clue how I can solve this problem.



Here is my job_conf

<job_conf>
    <plugins workers="2">
        <plugin id="gridengine" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner">
            <param id="drmaa_library_path">/opt/sge/lib/lx-amd64/libdrmaa.so</param>
        </plugin>
        <!--
        <plugin id="torque" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner">
            <param id="drmaa_library_path">/usr/lib/pbs-drmaa/lib/libdrmaa.so</param>
        </plugin>
        <plugin id="slurm" type="runner" load="galaxy.jobs.runners.slurm:SlurmJobRunner">
            <param id="drmaa_library_path">/usr/lib/slurm-drmaa/lib/libdrmaa.so</param>
        </plugin>
        -->
    </plugins>
    <handlers default="handlers">
        <handler id="handler0" tags="handlers"/>
        <handler id="handler1" tags="handlers"/>
    </handlers>
    <destinations default="cluster">
        <destination id="cluster" runner="gridengine"/>
        <!--
        <destination id="cluster" runner="torque"/>
        <destination id="cluster" runner="slurm"/>
        -->
    </destinations>
    <limits>
    </limits>
</job_conf>


best

vipul



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