Test Tool Shed uploads broken

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Test Tool Shed uploads broken

Peter Cock
Hi Greg & Dave,

I just tried to upload an update to my Blast2GO wrapper on the Test Tool Shed,
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go

This gave the following error, also note typo sucessfully [sic] -> successfully.

Internal Server Error
Galaxy was unable to sucessfully complete your request

URL: http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=e4de88c47079d971
Module galaxy.web.framework.middleware.error:149 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request
>>  body = method( trans, **kwargs )
Module galaxy.web.framework:98 in decorator
>>  return func( self, trans, *args, **kwargs )
Module galaxy.webapps.tool_shed.controllers.upload:122 in upload
>>  self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
Module galaxy.webapps.tool_shed.controllers.upload:326 in upload_tar
>>  undesirable_files_removed )
Module tool_shed.util.commit_util:116 in handle_directory_changes
>>  for undesirable_dir in undesirable_dirs:
NameError: global name 'undesirable_dirs' is not defined

Peter
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Re: Test Tool Shed uploads broken

Greg Von Kuster
Hi Peter,

Thanks for letting me know and sorry about the inconvenience.  I've fixed this in 9763:9c06caa86e2a which is now on the test tool shed.

Greg Von Kuster

On May 17, 2013, at 5:08 AM, Peter Cock wrote:

> Hi Greg & Dave,
>
> I just tried to upload an update to my Blast2GO wrapper on the Test Tool Shed,
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
>
> This gave the following error, also note typo sucessfully [sic] -> successfully.
>
> Internal Server Error
> Galaxy was unable to sucessfully complete your request
>
> URL: http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=e4de88c47079d971
> Module galaxy.web.framework.middleware.error:149 in __call__
>>> app_iter = self.application(environ, sr_checker)
> Module paste.debug.prints:106 in __call__
>>> environ, self.app)
> Module paste.wsgilib:543 in intercept_output
>>> app_iter = application(environ, replacement_start_response)
> Module paste.recursive:84 in __call__
>>> return self.application(environ, start_response)
> Module paste.httpexceptions:633 in __call__
>>> return self.application(environ, start_response)
> Module galaxy.web.framework.base:132 in __call__
>>> return self.handle_request( environ, start_response )
> Module galaxy.web.framework.base:190 in handle_request
>>> body = method( trans, **kwargs )
> Module galaxy.web.framework:98 in decorator
>>> return func( self, trans, *args, **kwargs )
> Module galaxy.webapps.tool_shed.controllers.upload:122 in upload
>>> self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
> Module galaxy.webapps.tool_shed.controllers.upload:326 in upload_tar
>>> undesirable_files_removed )
> Module tool_shed.util.commit_util:116 in handle_directory_changes
>>> for undesirable_dir in undesirable_dirs:
> NameError: global name 'undesirable_dirs' is not defined
>
> Peter


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Re: Test Tool Shed uploads broken

Peter Cock
On Fri, May 17, 2013 at 12:37 PM, Greg Von Kuster <[hidden email]> wrote:
> Hi Peter,
>
> Thanks for letting me know and sorry about the inconvenience.  I've fixed this in 9763:9c06caa86e2a which is now on the test tool shed.
>
> Greg Von Kuster

Great - that works for me now :)

Peter
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