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Testing workflows

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Testing workflows

Eric Rasche-2
Wondering if anyone has tooling to test a workflow as it exists in a specific galaxy instance? I'm looking to test some of my user's manually built workflows in our galaxy instance to make sure that we can detect issues when they arise (e.g. due to changes in the interfaces of our non-toolshed installed tools)

Ideally something like: 

$ my_tool $galaxy_url $api_key $workflow_id
  <set of files and their input IDs in the workflow>
> report.xunit.xml

If not we'll build something soon.

Cheers,
Eric

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Re: Testing workflows

Jelle Scholtalbers
Hi Eric,

this is a script I have used in the past https://github.com/scholtalbers/galaxy-test-workflows
It doesn't give you the nice feedback that you probably want, but maybe you have some use for it anyway.

Cheers,
Jelle



On Wed, Dec 14, 2016 at 4:26 AM, Eric Rasche <[hidden email]> wrote:
Wondering if anyone has tooling to test a workflow as it exists in a specific galaxy instance? I'm looking to test some of my user's manually built workflows in our galaxy instance to make sure that we can detect issues when they arise (e.g. due to changes in the interfaces of our non-toolshed installed tools)

Ideally something like: 

$ my_tool $galaxy_url $api_key $workflow_id
  <set of files and their input IDs in the workflow>
> report.xunit.xml

If not we'll build something soon.

Cheers,
Eric

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

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Please keep all replies on the list by using "reply all"
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and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
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