I've done a bit more work on this problem that I posted about on Friday. I'm working on streamlining the installation of two tools, one of which has a complex repository dependency on the other. FWIW, both tools are in the test tool shed, under visualization: xena_import has a complex repository dependency on start_xena.
I know that it should not be necessary to specify the toolshed and changeset revision in tool_dependencies.xml when indicating the complex repository dependency. But here is what I observed. When I specified the changeset_revision and toolshed, the installation worked fine. When I removed the changeset_revision tag and reinstalled the tool, I experienced the bug detailed below, where a Google Chrome pop-up window told me that the repository installation failed, and after I clicked OK on the pop-up window, Galaxy seemed to go into an infinite state of indicating that the tool was "Cloning" and showing the same repeated POST commands in paster.log. When I put the changeset_revision tag back again, the tool installation worked just fine.
Just to make sure that this wasn't all from some cruft hiding somewhere in my Galaxy installation, I started with a clean install today (including an 'hg update stable') and a clean shed_tools subdirectory.
I hope this helps. In the meantime, thanks, everyone for all of your help!
On Fri, Sep 12, 2014 at 12:02 PM, Melissa Cline <[hidden email]> wrote:
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