This tool was disabled before the job completed. Please contact your Galaxy administrator.

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This tool was disabled before the job completed. Please contact your Galaxy administrator.

Ravi Alla
Hi devs,
I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this?

 File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line 37, in __init__
    self.job_handler.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 35, in start
    self.job_queue.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 78, in start
    self.__check_jobs_at_startup()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 109, in __check_jobs_at_startup
    JobWrapper( job, self ).fail( 'This tool was disabled before the job completed.  Please contact your Galaxy administrator.' )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", line 761, in fail
    self.app.object_store.update_from_file(dataset.dataset, create=True)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 349, in update_from_file
    self.create(obj, **kwargs)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 298, in create
    open(path, 'w').close()  # Should be rb?
IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat'

Thanks
Ravi

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Re: This tool was disabled before the job completed. Please contact your Galaxy administrator.

Ravi Alla
Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up.
On Apr 4, 2014, at 11:16 AM, Ravi Alla <[hidden email]> wrote:

Hi devs,
I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this?

 File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line 37, in __init__
    self.job_handler.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 35, in start
    self.job_queue.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 78, in start
    self.__check_jobs_at_startup()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 109, in __check_jobs_at_startup
    JobWrapper( job, self ).fail( 'This tool was disabled before the job completed.  Please contact your Galaxy administrator.' )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", line 761, in fail
    self.app.object_store.update_from_file(dataset.dataset, create=True)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 349, in update_from_file
    self.create(obj, **kwargs)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 298, in create
    open(path, 'w').close()  # Should be rb?
IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat'

Thanks
Ravi


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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Re: This tool was disabled before the job completed. Please contact your Galaxy administrator.

Ravi Alla
Never mind,
I figured it out. I deleted all instances of the job and the temp dataset.
Thanks
R
On Apr 4, 2014, at 2:29 PM, Ravi Alla <[hidden email]> wrote:

Anyone please?? I cannot even start the galaxy server. Makes me wonder if something in the database got messed up.
On Apr 4, 2014, at 11:16 AM, Ravi Alla <[hidden email]> wrote:

Hi devs,
I deleted a tool called upload_local_file and tried to restart galaxy server but I keep getting the following error. Any idea how to solve this?

 File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line 37, in __init__
    self.job_handler.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 35, in start
    self.job_queue.start()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 78, in start
    self.__check_jobs_at_startup()
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line 109, in __check_jobs_at_startup
    JobWrapper( job, self ).fail( 'This tool was disabled before the job completed.  Please contact your Galaxy administrator.' )
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", line 761, in fail
    self.app.object_store.update_from_file(dataset.dataset, create=True)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 349, in update_from_file
    self.create(obj, **kwargs)
  File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", line 298, in create
    open(path, 'w').close()  # Should be rb?
IOError: [Errno 2] No such file or directory: '/global/scratch/galaxy/webapp/files/000/dataset_194.dat'

Thanks
Ravi



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/