Tool Release Announcement: JBrowse-in-Galaxy v0.4

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Tool Release Announcement: JBrowse-in-Galaxy v0.4

Eric Rasche-2
Howdy Galaxy devs,

A quick tool release announcement to ring in the new year.
The latest version of the JBrowse-in-Galaxy tool is now available!
https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b

This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version:
  • Support for dataset collections
  • Support for multiple contigs/genomes within the JBrowse instance
  • Excessive configuration options for controlling colouring of tracks
  • Removed interstitial, open JBrowse in the main panel with one click.
  • Support for translation tables other than table 1.

More details in the pull request for the curious.

And a silly image to top it off :)


Ciao,
Eric

-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
[hidden email]

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Re: Tool Release Announcement: JBrowse-in-Galaxy v0.4

Jasper Jan Koehorst

 

This is amazing news. As I cannot check it right now I am wondering if it has SPARQL support? To visualise genetic content from a spraql end point.

 

Happy new year!

 


From: [hidden email]
Sent: 31 December 2015 21:46
To: [hidden email]
Subject: [galaxy-dev] Tool Release Announcement: JBrowse-in-Galaxy v0.4

 

Howdy Galaxy devs,

A quick tool release announcement to ring in the new year.
The latest version of the JBrowse-in-Galaxy tool is now available!
https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b

This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version:

  • Support for dataset collections
  • Support for multiple contigs/genomes within the JBrowse instance
  • Excessive configuration options for controlling colouring of tracks
  • Removed interstitial, open JBrowse in the main panel with one click.
  • Support for translation tables other than table 1.

More details in the pull request for the curious.

And a silly image to top it off :)

cid:part3.04080701.02080403@tamu.edu

Ciao,
Eric

-- 
Eric Rasche
Programmer II
 
Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
[hidden email]

 


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Tool Release Announcement: JBrowse-in-Galaxy v0.4

Eric Rasche-2
Hi Jasper,

No SPARQL support on the Galaxy end yet, I've added that to the todo list for v0.5
Thanks for the suggestion!

Cheers,
Eric

On 12/31/2015 06:13 PM, Jasper Koehorst wrote:

 

This is amazing news. As I cannot check it right now I am wondering if it has SPARQL support? To visualise genetic content from a spraql end point.

 

Happy new year!

 


From: [hidden email]
Sent: 31 December 2015 21:46
To: [hidden email]
Subject: [galaxy-dev] Tool Release Announcement: JBrowse-in-Galaxy v0.4

 

Howdy Galaxy devs,

A quick tool release announcement to ring in the new year.
The latest version of the JBrowse-in-Galaxy tool is now available!
https://toolshed.g2.bx.psu.edu/view/iuc/jbrowse/7342f467507b

This tool was discussed in a lightning talk at GCC2015 but would not install nicely due to a broken dependency chain. This has since been fixed and many features added in the latest version:

  • Support for dataset collections
  • Support for multiple contigs/genomes within the JBrowse instance
  • Excessive configuration options for controlling colouring of tracks
  • Removed interstitial, open JBrowse in the main panel with one click.
  • Support for translation tables other than table 1.

More details in the pull request for the curious.

And a silly image to top it off :)

Ciao,
Eric

-- 
Eric Rasche
Programmer II
 
Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
[hidden email]

 


-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
[hidden email]

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/