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Tool dependency installation on older Galaxy installations

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Tool dependency installation on older Galaxy installations

Brian Claywell-2
We're running an older version of Galaxy (15.07) locally. Is there currently any way to tell what tools in the toolshed (or, worse, what versions of a tool with multiple revisions) won't install their dependencies properly because they rely on Conda dependency management and don't support the old dependency management system any more?

Thanks!


Cheers,

Brian

--
Brian Claywell | programmer/analyst
Matsen Group   | matsen.fredhutch.org
Fred Hutchinson Cancer Research Center

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Re: Tool dependency installation on older Galaxy installations

Björn Grüning-3
Hi Brian,

tools that don't support the traditional dependency management system do
usually not have any tool_dependencies.xml file attached.

This is a pretty good indicator I think.

Sorry for the confusion,
Bjoern


Am 14.03.2017 um 22:58 schrieb Brian Claywell:

> We're running an older version of Galaxy (15.07) locally. Is there
> currently any way to tell what tools in the toolshed (or, worse, what
> versions of a tool with multiple revisions) won't install their
> dependencies properly because they rely on Conda dependency management
> and don't support the old dependency management system any more?
>
> Thanks!
>
>
> Cheers,
>
> Brian
>
> --
> Brian Claywell | programmer/analyst
> Matsen Group   | matsen.fredhutch.org <http://matsen.fhcrc.org/>
> Fred Hutchinson Cancer Research Center
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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