UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

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UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

Ramon Tiburski
Hi,

I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 32bit, maybe I need get a 64bit.

Someone can help me?

Server Error

URL: http://localhost:8080/datasets/8c49be448cfe29bc/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:194 in handle_request
>>  return body( environ, start_response )
Module galaxy.web.framework:876 in render
>>  template.render_context( context )
Module mako.template:319 in render_context
>>  **kwargs)
Module mako.runtime:692 in _render_context
>>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
>>  callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
>>  __M_writer(unicode(next.body()))
Module _dataset_large_file_mako:45 in render_body
>>  __M_writer(filters.html_escape(unicode( unicode( truncated_data, 'utf-8' ) )))
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

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Re: UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

Daniel Blankenberg
<base href="x-msg://1274/">Hi Ramon,

I've committed a patch to the stable branch that should resolve this issue. Please update your Galaxy instance and let us know if this has fixed it for you.


Thanks for using Galaxy,

Dan


On May 9, 2013, at 8:40 AM, Ramon Tiburski wrote:

Hi,

I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 32bit, maybe I need get a 64bit.

Someone can help me?

Server Error

URL: http://localhost:8080/datasets/8c49be448cfe29bc/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:194 in handle_request
>>  return body( environ, start_response )
Module galaxy.web.framework:876 in render
>>  template.render_context( context )
Module mako.template:319 in render_context
>>  **kwargs)
Module mako.runtime:692 in _render_context
>>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
>>  callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
>>  __M_writer(unicode(next.body()))
Module _dataset_large_file_mako:45 in render_body
>>  __M_writer(filters.html_escape(unicode( unicode( truncated_data, 'utf-8' ) )))
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

Ramon Tiburski
OK. thank you so much, but how can I update my instance?


Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
From: [hidden email]
Date: Thu, 9 May 2013 11:02:46 -0400
CC: [hidden email]
To: [hidden email]

Hi Ramon,

I've committed a patch to the stable branch that should resolve this issue. Please update your Galaxy instance and let us know if this has fixed it for you.


Thanks for using Galaxy,

Dan


On May 9, 2013, at 8:40 AM, Ramon Tiburski wrote:

Hi,

I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 32bit, maybe I need get a 64bit.

Someone can help me?

Server Error

URL: http://localhost:8080/datasets/8c49be448cfe29bc/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:194 in handle_request
>>  return body( environ, start_response )
Module galaxy.web.framework:876 in render
>>  template.render_context( context )
Module mako.template:319 in render_context
>>  **kwargs)
Module mako.runtime:692 in _render_context
>>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
>>  callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
>>  __M_writer(unicode(next.body()))
Module _dataset_large_file_mako:45 in render_body
>>  __M_writer(filters.html_escape(unicode( unicode( truncated_data, 'utf-8' ) )))
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

Daniel Blankenberg
<base href="x-msg://1293/">
Assuming you checked Galaxy out using mercurial, stop your Galaxy instance and go into the Galaxy root directory and execute:

hg pull -u

Then start your Galaxy instance back up.


On May 9, 2013, at 12:36 PM, Ramon Tiburski wrote:

OK. thank you so much, but how can I update my instance?


Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
From: [hidden email]
Date: Thu, 9 May 2013 11:02:46 -0400
CC: [hidden email]
To: [hidden email]

Hi Ramon,

I've committed a patch to the stable branch that should resolve this issue. Please update your Galaxy instance and let us know if this has fixed it for you.


Thanks for using Galaxy,

Dan


On May 9, 2013, at 8:40 AM, Ramon Tiburski wrote:

Hi,

I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 32bit, maybe I need get a 64bit.

Someone can help me?

Server Error

URL: http://localhost:8080/datasets/8c49be448cfe29bc/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:194 in handle_request
>>  return body( environ, start_response )
Module galaxy.web.framework:876 in render
>>  template.render_context( context )
Module mako.template:319 in render_context
>>  **kwargs)
Module mako.runtime:692 in _render_context
>>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
>>  callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
>>  __M_writer(unicode(next.body()))
Module _dataset_large_file_mako:45 in render_body
>>  __M_writer(filters.html_escape(unicode( unicode( truncated_data, 'utf-8' ) )))
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte

Ramon Tiburski
Thank you so much


Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
From: [hidden email]
Date: Thu, 9 May 2013 12:45:25 -0400
CC: [hidden email]
To: [hidden email]

Assuming you checked Galaxy out using mercurial, stop your Galaxy instance and go into the Galaxy root directory and execute:

hg pull -u

Then start your Galaxy instance back up.


On May 9, 2013, at 12:36 PM, Ramon Tiburski wrote:

OK. thank you so much, but how can I update my instance?


Subject: Re: [galaxy-dev] UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
From: [hidden email]
Date: Thu, 9 May 2013 11:02:46 -0400
CC: [hidden email]
To: [hidden email]

Hi Ramon,

I've committed a patch to the stable branch that should resolve this issue. Please update your Galaxy instance and let us know if this has fixed it for you.


Thanks for using Galaxy,

Dan


On May 9, 2013, at 8:40 AM, Ramon Tiburski wrote:

Hi,

I uploaded some data and when I click in the eye to see the data I get the following error. I don't know what can I do to fix this problem, I trying install some packges from python but didn't solve my problem. I'm starting think about my operational system, I have ubuntu 12.04 32bit, maybe I need get a 64bit.

Someone can help me?

Server Error

URL: http://localhost:8080/datasets/8c49be448cfe29bc/display/?preview=True
Module paste.exceptions.errormiddleware:144 in __call__
>>  app_iter = self.application(environ, sr_checker)
Module paste.debug.prints:106 in __call__
>>  environ, self.app)
Module paste.wsgilib:543 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:84 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>>  return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:194 in handle_request
>>  return body( environ, start_response )
Module galaxy.web.framework:876 in render
>>  template.render_context( context )
Module mako.template:319 in render_context
>>  **kwargs)
Module mako.runtime:692 in _render_context
>>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
>>  callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
>>  __M_writer(unicode(next.body()))
Module _dataset_large_file_mako:45 in render_body
>>  __M_writer(filters.html_escape(unicode( unicode( truncated_data, 'utf-8' ) )))
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/