Venn diagram example data

classic Classic list List threaded Threaded
4 messages Options
| Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Venn diagram example data

Steven Shen
Dear Galaxy list,

I am interested in Galaxy Charts visualization.But venn diagram confuses me when I upload my tabular data, it seems venn diagram need  one column observations at least, actually I don't clear what should be contained in the one column observations.
 
So is there any venn diagram example data or usage for this charts plugin ? Sad to say I am not good at JavaScript :)

Thank you very much.

Regards,
Steven

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Venn diagram example data

Peter Cock
Hi Steven,

Just in case, you're not talking about my older simpler Galaxy Tool
for drawing simple Venn Diagrams, are you?

https://toolshed.g2.bx.psu.edu/view/peterjc/venn_list
https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list

This reminds me that I ought to update that tool to work with
dependencies via conda...

Peter

On Mon, Jul 24, 2017 at 2:16 PM, Steven Shen <[hidden email]> wrote:

> Dear Galaxy list,
>
> I am interested in Galaxy Charts visualization.But venn diagram confuses me
> when I upload my tabular data, it seems venn diagram need  one column
> observations at least, actually I don't clear what should be contained in
> the one column observations.
>
> So is there any venn diagram example data or usage for this charts plugin ?
> Sad to say I am not good at JavaScript :)
>
> Thank you very much.
>
> Regards,
> Steven
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Venn diagram example data

Aysam Guerler
Sorry for the late response. So the venn diagram visualizes the overlap between sets. Each set is represented by entries in a column e.g.

#SET1 SET2 SET3
A         G        A
B         H        B
C         A        G
D         B        H
E         C        X
F         D        Z

I hope this helps.

Thanks
Sam

On Thu, Jul 27, 2017 at 11:33 AM, Peter Cock <[hidden email]> wrote:
Hi Steven,

Just in case, you're not talking about my older simpler Galaxy Tool
for drawing simple Venn Diagrams, are you?

https://toolshed.g2.bx.psu.edu/view/peterjc/venn_list
https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list

This reminds me that I ought to update that tool to work with
dependencies via conda...

Peter

On Mon, Jul 24, 2017 at 2:16 PM, Steven Shen <[hidden email]> wrote:
> Dear Galaxy list,
>
> I am interested in Galaxy Charts visualization.But venn diagram confuses me
> when I upload my tabular data, it seems venn diagram need  one column
> observations at least, actually I don't clear what should be contained in
> the one column observations.
>
> So is there any venn diagram example data or usage for this charts plugin ?
> Sad to say I am not good at JavaScript :)
>
> Thank you very much.
>
> Regards,
> Steven
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
| Threaded
Open this post in threaded view
|  
Report Content as Inappropriate

Re: Venn diagram example data

Peter Cock
How does the plugin expect cases where the sets have a different
number of entries to be presented? Simply blank cells in the tab
separated table?

Peter

On Thu, Jul 27, 2017 at 4:43 PM, Aysam Guerler <[hidden email]> wrote:

> Sorry for the late response. So the venn diagram visualizes the overlap
> between sets. Each set is represented by entries in a column e.g.
>
> #SET1 SET2 SET3
> A         G        A
> B         H        B
> C         A        G
> D         B        H
> E         C        X
> F         D        Z
>
> I hope this helps.
>
> Thanks
> Sam
>
> On Thu, Jul 27, 2017 at 11:33 AM, Peter Cock <[hidden email]>
> wrote:
>>
>> Hi Steven,
>>
>> Just in case, you're not talking about my older simpler Galaxy Tool
>> for drawing simple Venn Diagrams, are you?
>>
>> https://toolshed.g2.bx.psu.edu/view/peterjc/venn_list
>> https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list
>>
>> This reminds me that I ought to update that tool to work with
>> dependencies via conda...
>>
>> Peter
>>
>> On Mon, Jul 24, 2017 at 2:16 PM, Steven Shen <[hidden email]>
>> wrote:
>> > Dear Galaxy list,
>> >
>> > I am interested in Galaxy Charts visualization.But venn diagram confuses
>> > me
>> > when I upload my tabular data, it seems venn diagram need  one column
>> > observations at least, actually I don't clear what should be contained
>> > in
>> > the one column observations.
>> >
>> > So is there any venn diagram example data or usage for this charts
>> > plugin ?
>> > Sad to say I am not good at JavaScript :)
>> >
>> > Thank you very much.
>> >
>> > Regards,
>> > Steven
>> >
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   https://lists.galaxyproject.org/
>>
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/
>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
Loading...