Warning: Incorrect datetime value in Galaxy 16.01

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Warning: Incorrect datetime value in Galaxy 16.01

SAPET, Frederic

Hello

 

When I try to upload a file, I can see this error in the log file :

 

/softs/bioinfo/galaxy/.venv/lib/python2.7/site-packages/sqlalchemy/engine/default.py:450: Warning: Incorrect datetime value: '2016-03-29 07:25:29.220Z' for column 'update_time' at row 32

 

On the interface, the upload job seems to be stuck. The history will never be refreshed.

Otherwise, if I manually click on the “refresh history” icon, it works. The error is not shown again and my file appears in the history.

 

Does anybody see this ? I hope it will be easy to debug because this is annoying.

 

Thank you.

 

Fred

 

---

Frederic Sapet

Bioinformatics Research Engineer

BIOGEMMA - Upstream Genomics Group

Centre de Recherche de Chappes

CS 90126

63720 CHAPPES

FRANCE

Tel : +33 (0)4 73 67 88 54

Fax : +33 (0)4 73 67 88 99

E-mail : [hidden email]

 


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Re: Warning: Incorrect datetime value in Galaxy 16.01

Nicola Soranzo-2
Hi Fred,
can you please check that you are on the latest commit of the release_16.01 branch? If yes, please open an issue at https://github.com/galaxyproject/galaxy/issues/new specifying which database server you are using and providing a complete traceback from the log file?

Thanks a lot for using Galaxy,
Nicola


On 29/03/16 08:33, SAPET, Frederic wrote:

Hello

 

When I try to upload a file, I can see this error in the log file :

 

/softs/bioinfo/galaxy/.venv/lib/python2.7/site-packages/sqlalchemy/engine/default.py:450: Warning: Incorrect datetime value: '2016-03-29 07:25:29.220Z' for column 'update_time' at row 32

 

On the interface, the upload job seems to be stuck. The history will never be refreshed.

Otherwise, if I manually click on the “refresh history” icon, it works. The error is not shown again and my file appears in the history.

 

Does anybody see this ? I hope it will be easy to debug because this is annoying.

 

Thank you.

 

Fred

 

---

Frederic Sapet

Bioinformatics Research Engineer

BIOGEMMA - Upstream Genomics Group

Centre de Recherche de Chappes

CS 90126

63720 CHAPPES

FRANCE

Tel : +33 (0)4 73 67 88 54

Fax : +33 (0)4 73 67 88 99

E-mail : [hidden email]

 



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Re: Warning: Incorrect datetime value in Galaxy 16.01

SAPET, Frederic

Hi Nicola

 

Thank you.

 

Issue is created :

https://github.com/galaxyproject/galaxy/issues/2037

 

Fred

 

 

De : Nicola Soranzo [mailto:[hidden email]] De la part de Nicola Soranzo
Envoyé : mardi 29 mars 2016 19:17
À : SAPET, Frederic <[hidden email]>; [hidden email]
Objet : Re: [galaxy-dev] Warning: Incorrect datetime value in Galaxy 16.01

 

Hi Fred,
can you please check that you are on the latest commit of the release_16.01 branch? If yes, please open an issue at https://github.com/galaxyproject/galaxy/issues/new specifying which database server you are using and providing a complete traceback from the log file?

Thanks a lot for using Galaxy,
Nicola

On 29/03/16 08:33, SAPET, Frederic wrote:

Hello

 

When I try to upload a file, I can see this error in the log file :

 

/softs/bioinfo/galaxy/.venv/lib/python2.7/site-packages/sqlalchemy/engine/default.py:450: Warning: Incorrect datetime value: '2016-03-29 07:25:29.220Z' for column 'update_time' at row 32

 

On the interface, the upload job seems to be stuck. The history will never be refreshed.

Otherwise, if I manually click on the “refresh history” icon, it works. The error is not shown again and my file appears in the history.

 

Does anybody see this ? I hope it will be easy to debug because this is annoying.

 

Thank you.

 

Fred

 

---

Frederic Sapet

Bioinformatics Research Engineer

BIOGEMMA - Upstream Genomics Group

Centre de Recherche de Chappes

CS 90126

63720 CHAPPES

FRANCE

Tel : +33 (0)4 73 67 88 54

Fax : +33 (0)4 73 67 88 99

E-mail : [hidden email]

 




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/
 
To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

 


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/