XML/json code to parse/get/create wrapper files to/from galaxy

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XML/json code to parse/get/create wrapper files to/from galaxy

Rémy Dernat
Hi,

I created a little repository on github to parse or create wrapper files. I have not implemented everything, but it is a good base, i.e. if you want to create a galaxy wrapper from a standard help output !

Just clone it and have fun : 

cd XMLparser-wrapper
python ParserConverterXML.py --help


python ParserConverterXML.py h2gw -c "ls --help" -o ../ls.gw.xml

Any help is welcome on this little project. Exemples : json for workflows...

Best regards,


Remy

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Re: XML/json code to parse/get/create wrapper files to/from galaxy

Björn Grüning-3
Very cool, I will give it a try :)

Am 21.07.2014 16:27, schrieb Rémy Dernat:

> Hi,
>
> I created a little repository on github to parse or create wrapper files. I
> have not implemented everything, but it is a good base, i.e. if you want to
> create a galaxy wrapper from a standard help output !
>
> Just clone it and have fun :
>
> git clone https://github.com/remyd1/XMLparser-wrapper.git
> cd XMLparser-wrapper
> python ParserConverterXML.py --help
>
>
> python ParserConverterXML.py h2gw -c "ls --help" -o ../ls.gw.xml
>
> Any help is welcome on this little project. Exemples : json for workflows...
>
> Best regards,
>
>
> Remy
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>    http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>    http://galaxyproject.org/search/mailinglists/
>
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Re: XML/json code to parse/get/create wrapper files to/from galaxy

Rémy Dernat
All the feedbacks are welcome.

Regards


2014-07-21 19:15 GMT+02:00 Björn Grüning <[hidden email]>:
Very cool, I will give it a try :)

Am <a href="tel:21.07.2014%2016" value="+12107201416" target="_blank">21.07.2014 16:27, schrieb Rémy Dernat:
Hi,

I created a little repository on github to parse or create wrapper files. I
have not implemented everything, but it is a good base, i.e. if you want to
create a galaxy wrapper from a standard help output !

Just clone it and have fun :

git clone https://github.com/remyd1/XMLparser-wrapper.git
cd XMLparser-wrapper
python ParserConverterXML.py --help


python ParserConverterXML.py h2gw -c "ls --help" -o ../ls.gw.xml

Any help is welcome on this little project. Exemples : json for workflows...

Best regards,


Remy



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
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