cytoscape & charts

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cytoscape & charts

Matthias Bernt
Dear galaxy-dev,

I just wanted to test the exciting cytoscape charts plugin that was just
announced: https://github.com/galaxyproject/galaxy/pull/3817

So I created a small sif file

nodeA xx nodeB
nodeB xx nodeC
nodeC xx nodeD
nodeD xx nodeA
nodeB xx nodeD

I guess I have to click the "Visualize" button of the data set where I
have the options "Charts" and "Graph Visualizations". The former has
only oine option: Multiple Sequence Alignment (BioJS). So I guess its
the latter which shows me a graph. But it looks different to the example
in the pull request, e.g. node names are not shown and I can not
interact as shown in the three figures.

Is there some docomentation that I could read. In general I would be
interested to read about the Charts.

Would be grateful about some pointers.

Cheers,
Matthias



--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------


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Re: cytoscape & charts

Aysam Guerler
Hi Matthias,

Can you verify that the file is recognized as 'sif'-file in the Galaxy history and not as 'txt'-file? Please change the format if necessary.

I hope this helps,
Sam

On Wed, Apr 5, 2017 at 7:01 AM, Matthias Bernt <[hidden email]> wrote:
Dear galaxy-dev,

I just wanted to test the exciting cytoscape charts plugin that was just announced: https://github.com/galaxyproject/galaxy/pull/3817

So I created a small sif file

nodeA xx nodeB
nodeB xx nodeC
nodeC xx nodeD
nodeD xx nodeA
nodeB xx nodeD

I guess I have to click the "Visualize" button of the data set where I have the options "Charts" and "Graph Visualizations". The former has only oine option: Multiple Sequence Alignment (BioJS). So I guess its the latter which shows me a graph. But it looks different to the example in the pull request, e.g. node names are not shown and I can not interact as shown in the three figures.

Is there some docomentation that I could read. In general I would be interested to read about the Charts.

Would be grateful about some pointers.

Cheers,
Matthias



--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone <a href="tel:%2B49%20341%20235%20482296" value="+49341235482296" target="_blank">+49 341 235 482296,
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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