reports an error "Error in file(file, "rt") : cannot open the connection Calls: read.delim -> read.table -> file" The error comes from script difftest_deseq2.R - it is getting three command arguments (and they are right) and attempts to read files INFILE_COUNTS.tab and INFILE_CONDITIONS.tab
(where INFILE - the second argument.) But the problem that these two files are never created in the database/files/NNN !
Where can be the root of the problem?
It is a local installation of Galaxy OS - CentOS 6.5 with all updates.
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