environment for jobs

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environment for jobs

Matthias Bernt
Dear list,

there seem to be two ways to setup an environment for jobs:

- in galaxy.ini: variable environment_setup_file
- in job_conf.xml: <env> tag in the destinations

I'm wondering what the rationale is behind these two options?
Is it to setup special environments for each destination?

I guess that both should be loaded in each job. But in which order?

I guessed that the file given in the <env> tag is sourced in the job
submit scripts, but this seems to happen not for all jobs...?

Best,
Matthias

--

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Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
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Phone +49 341 235 482296,
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