external display and data editing

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external display and data editing

Nils Paulhe
Dear list,

I'm working on data visualization / display in galaxy.
I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history.
In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar?
Cheers

Nils

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Re: external display and data editing

Gildas Le Corguillé
Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE):
 - https://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html 

Cheers

Gildas

-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project
http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
------------------------------------------------------------------



Le 15 nov. 2017 à 09:26, Nils Paulhe <[hidden email]> a écrit :

Dear list,

I'm working on data visualization / display in galaxy.
I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history.
In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar?
Cheers

Nils
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/


___________________________________________________________
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and other Galaxy lists, please use the interface at:
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Re: external display and data editing

Yvan Le Bras-2
Hi Nils,

You're right, the way used to upload data from an external display to a Galaxy history, for example in the case of Galaxy Interactive Environment as mentionned by Gildas, is to use the Galaxy API.

Cheers,

Yvan


De: "Gildas Le Corguillé" <[hidden email]>
À: "Nils Paulhe" <[hidden email]>
Cc: "Galaxy-dev" <[hidden email]>
Envoyé: Mercredi 22 Novembre 2017 11:03:38
Objet: Re: [galaxy-dev] external display and data editing

Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE):
 - https://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html 

Cheers

Gildas

-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project
http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
------------------------------------------------------------------



Le 15 nov. 2017 à 09:26, Nils Paulhe <[hidden email]> a écrit :

Dear list,

I'm working on data visualization / display in galaxy.
I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history.
In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar?
Cheers

Nils
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/

--
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Yvan Le Bras, PhD                                                                                                                   @Yvan2935                                                                                                                           <°))))><
                                                                                                                               Projet 65 Millions d'observateurs                                                      
                                            Bureau 34, Station de Biologie marine BP 225, 29182 Concarneau CEDEX --- MNHN EGB/CESCO UMR 7204 43 rue Buffon 75005 PARIS
                                                                                                                       tél.:  +33 (0) 2 98 50 99 35 / +33 (0) 6.10.43.96.51
                                                                                                                                           [hidden email]

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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Re: external display and data editing

Nils Paulhe
thanks to all of you for your answers,

Cheers,

Nils

On 22 November 2017 at 11:34, Yvan Le Bras <[hidden email]> wrote:
Hi Nils,

You're right, the way used to upload data from an external display to a Galaxy history, for example in the case of Galaxy Interactive Environment as mentionned by Gildas, is to use the Galaxy API.

Cheers,

Yvan


De: "Gildas Le Corguillé" <[hidden email]>
À: "Nils Paulhe" <[hidden email]>
Cc: "Galaxy-dev" <[hidden email]>
Envoyé: Mercredi 22 Novembre 2017 11:03:38
Objet: Re: [galaxy-dev] external display and data editing

Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE):
 - https://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html 

Cheers

Gildas

-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project
http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: <a href="tel:02%2098%2029%2023%2081" value="+33298292381" target="_blank">+33 2 98 29 23 81
------------------------------------------------------------------



Le 15 nov. 2017 à 09:26, Nils Paulhe <[hidden email]> a écrit :

Dear list,

I'm working on data visualization / display in galaxy.
I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history.
In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar?
Cheers

Nils
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/

--
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Yvan Le Bras, PhD                                                                                                                   @Yvan2935                                                                                                                           <°))))><
                                                                                                                               Projet 65 Millions d'observateurs                                                      
                                            Bureau 34, Station de Biologie marine BP 225, 29182 Concarneau CEDEX --- MNHN EGB/CESCO UMR 7204 43 rue Buffon 75005 PARIS
                                                                                                                       tél.:  <a href="tel:02%2098%2050%2099%2035" value="+33298509935" target="_blank">+33 (0) 2 98 50 99 35 / <a href="tel:06%2010%2043%2096%2051" value="+33610439651" target="_blank">+33 (0) 6.10.43.96.51
                                                                                                                                           [hidden email]


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Bioconductor packages in Galaxy

Deepak Tanwar
In reply to this post by Gildas Le Corguillé
Hi,

I am using galaxy via Docker. 
I cannot find saw package on galaxy toolshed. It is available on bioconda: https://bioconda.github.io/recipes/bioconductor-csaw/README.html

How can I use it Galaxy?

Thank you,
Deepak


On Nov 22, 2017, at 05:03, Gildas Le Corguillé <[hidden email]> wrote:

Salut Nils,

I think that you should take a look at the Galaxy Interactive Environment (GIE):
 - https://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html 

Cheers

Gildas

-----------------------------------------------------------------
Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project
http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
------------------------------------------------------------------



Le 15 nov. 2017 à 09:26, Nils Paulhe <[hidden email]> a écrit :

Dear list,

I'm working on data visualization / display in galaxy.
I'm wondering if it's possible to save a resource edited from the viewer plugin or an external display in the current history.
In my opinion the easier / proper way is to use an external display to show / edit the resources and upload the edited files in the current history using galaxy API.

Does anyone have tried something similar?
Cheers

Nils
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/