fastq-mcf parameter bug

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fastq-mcf parameter bug

Michael Mason
First time posting so I hope I do this correctly.

I am using galaxy locally and installed the ea-utils fastq-mcf (FastqMcf). When using the trimming options (not defaults) the –C option gets set to the –s option. I checked the fastq-mcf.xml wrapper and indeed there is an mistake on line 42.

 -s $trimming.sampcnt  

Should be 
 -C $trimming.sampcnt  

I hope this helps,

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