fastq-mcf parameter bug

classic Classic list List threaded Threaded
1 message Options
| Threaded
Open this post in threaded view
|

fastq-mcf parameter bug

Michael Mason
First time posting so I hope I do this correctly.

I am using galaxy locally and installed the ea-utils fastq-mcf (FastqMcf). When using the trimming options (not defaults) the –C option gets set to the –s option. I checked the fastq-mcf.xml wrapper and indeed there is an mistake on line 42.

 -s $trimming.sampcnt  

Should be 
 -C $trimming.sampcnt  

I hope this helps,
Cheers,
Mike

--CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/