genome upload

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genome upload

Marion Cerri
To whom it concerns,
I am Marion Cerri, post doc in the Parniske’s lab, in Munich. I am working with ChIP-seq data in the moment.
I would like to use the Lotus japonicus (version 3.0) for mapping reads, but the genome is not available on galaxy. Would it be possible to upload it ? Do I have to provide the file to you, and if so in fasta format ?
Thanks in advance
Best Regards
Marion Cerri
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Re: genome upload

Jennifer Hillman-Jackson

Hello Marion,

To use this genome immediately, it is best to use it as a custom reference genome. This is how: https://galaxyproject.org/learn/custom-genomes/

To have it reviewed for inclusion at Galaxy Main as a natively indexed genome, please add a comment to this master genome request ticket. Include the build details and a link to a public repository (NCBI, etc) that hosts the genome data. Details here: https://github.com/galaxyproject/galaxy/issues/1470

Thanks!


Jen

--
Jennifer Hillman-Jackson
Galaxy Application Support

On Tue, Jul 25, 2017 at 8:34 AM, Marion Cerri <[hidden email]> wrote:
To whom it concerns,
I am Marion Cerri, post doc in the Parniske’s lab, in Munich. I am working with ChIP-seq data in the moment.
I would like to use the Lotus japonicus (version 3.0) for mapping reads, but the genome is not available on galaxy. Would it be possible to upload it ? Do I have to provide the file to you, and if so in fasta format ?
Thanks in advance
Best Regards
Marion Cerri
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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