[hg] galaxy 1545: Modified help message for indel rate tool.

classic Classic list List threaded Threaded
1 message Options
| Threaded
Open this post in threaded view
|

[hg] galaxy 1545: Modified help message for indel rate tool.

Greg Von Kuster
details:   http://www.bx.psu.edu/hg/galaxy/rev/cec03ea2d5aa
changeset: 1545:cec03ea2d5aa
user:      guru
date:      Mon Oct 06 09:33:52 2008 -0400
description:
Modified help message for indel rate tool.

1 file(s) affected in this change:

tools/regVariation/getIndelRates_3way.xml

diffs (25 lines):

diff -r 7e2ec07716b8 -r cec03ea2d5aa tools/regVariation/getIndelRates_3way.xml
--- a/tools/regVariation/getIndelRates_3way.xml Fri Oct 03 16:06:01 2008 -0400
+++ b/tools/regVariation/getIndelRates_3way.xml Mon Oct 06 09:33:52 2008 -0400
@@ -14,8 +14,8 @@
         
         <conditional name="region">
           <param name="type" type="select" label="Estimate rates corresponding to" multiple="false">
-            <option value="align" selected="True">Alignment block</option>
-            <option value="win">Intervals in your history</option>
+            <option value="win" selected="True">Intervals in your history</option>
+            <option value="align">Alignment block</option>
          </param>
          <when value="win">
             <param format="interval" name="input2" type="data" label="Choose intervals">
@@ -45,8 +45,8 @@
 
 **What it does**
 
-This tool estimates the insertion and deletion rates for alignments in a window of specified size.
-
+This tool estimates the insertion and deletion rates for alignments in a window of specified size. Rates are computed over the total adjusted lengths (adjusted by disregarding masked bases) of all the alignments blocks from the indel file that fall within that window.
+  
 -----
 
 .. class:: warningmark