[hg] galaxy 1546: Updating "regional variation' section in tool_...

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[hg] galaxy 1546: Updating "regional variation' section in tool_...

Greg Von Kuster
details:   http://www.bx.psu.edu/hg/galaxy/rev/d93cf9d961bb
changeset: 1546:d93cf9d961bb
user:      guru
date:      Mon Oct 06 09:40:47 2008 -0400
description:
Updating "regional variation' section in tool_conf.xml.main.

1 file(s) affected in this change:

tool_conf.xml.main

diffs (33 lines):

diff -r cec03ea2d5aa -r d93cf9d961bb tool_conf.xml.main
--- a/tool_conf.xml.main Mon Oct 06 09:33:52 2008 -0400
+++ b/tool_conf.xml.main Mon Oct 06 09:40:47 2008 -0400
@@ -122,14 +122,22 @@
     <tool file="visualization/build_ucsc_custom_track.xml" />
   </section>
   <section name="Regional Variation" id="regVar">
-   <tool file="regVariation/windowSplitter.xml" />
-   <tool file="regVariation/featureCounter.xml" />
- <tool file="regVariation/quality_filter.xml" />
+    <tool file="regVariation/windowSplitter.xml" />
+    <tool file="regVariation/featureCounter.xml" />
+    <tool file="regVariation/quality_filter.xml" />
     <tool file="regVariation/maf_cpg_filter.xml" />
- <!--
- <tool file="regVariation/getIndels_2way.xml" />
- <tool file="regVariation/getIndels_3way.xml" />
- -->
+    <tool file="regVariation/getIndels_2way.xml" />
+    <tool file="regVariation/getIndels_3way.xml" />
+    <tool file="regVariation/getIndelRates_3way.xml" />
+    <tool file="regVariation/substitutions.xml" />
+    <tool file="regVariation/substitution_rates.xml" />
+    <tool file="regVariation/microsats_alignment_level.xml" />
+    <tool file="regVariation/microsats_mutability.xml" />
+  </section>
+  <section name="Multiple regression" id="multReg">
+    <tool file="regVariation/linear_regression.xml" />
+    <tool file="regVariation/best_regression_subsets.xml" />
+    <tool file="regVariation/rcve.xml" />
   </section>
  <section name="Evolution: HyPhy" id="hyphy">
     <tool file="hyphy/hyphy_branch_lengths_wrapper.xml" />