classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view


Mark Lindsay
Dear All

have very little experience in this area and probably making a very basic mistake but I am trying to load the hg38 reference genome into a local instance of galaxy (not installed by myself) using ‘Create DBkey and reference genome’ using ‘hg38’ in the UCSC DBkey option box(es) but keep getting the following error message either

‘invalid DBkey”


'Exception: Unable to determine filename for UCSC Genome for hg38: ['.', '..', 'est.fa.gz', 'est.fa.gz.md5', 'mrna.fa.gz', 'mrna.fa.gz.md5', 'refMrna.fa.gz', 'refMrna.fa.gz.md5', 'xenoMrna.fa.gz', 'xenoMrna.fa.gz.md5', 'xenoRefMrna.fa.gz', 'xenoRefMrna.fa.gz.md5', 'analysisSet', 'README.txt', 'hg38.2bit', 'hg38.agp.gz', 'hg38.chromFa.tar.gz', 'hg38.chromFaMasked.tar.gz', 'hg38.fa.align.gz', 'hg38.fa.gz', 'hg38.fa.masked.gz', 'hg38.fa.out.gz', 'hg38.trf.bed.gz', 'md5sum.txt’]

Could anybody point me in the right direction?

Many Thanks


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at: