htseq_count version 0.6.1p1 dated (2016-09-21) and (2015-07-28)

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htseq_count version 0.6.1p1 dated (2016-09-21) and (2015-07-28)

Raphenya, Amogelang
Hi,

Both versions are not working. I’m getting the following error;

[bam_header_read] EOF marker is absent. The input is probably truncated.
[sam_header_read2] 194 sequences loaded.
[sam_read1] reference '' is recognized as '*'.
Parse error at line 1: invalid CIGAR character
Any ideas?

Cheers.

Amos Raphenya, B.Eng 
Bioinformatics Software Developer
Department of Biochemistry & Biomedical Sciences
McMaster University, MDCL 2317
p: (905) 525-9140
a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1
skype: amos_raphenya


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