input file empty

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input file empty

Sofie THIJS
Hi,

I have a problem with uploading the picrust biom-file to start the Normalize By Copy Number, on the webpage: http://huttenhower.sph.harvard.edu/galaxy/root?tool_id=PICRUSt_normalize.
In attachment is the template biom-file provided in the tutorial, so it should work.
After I upload the biom in 'get data'; I can not choose the file in the window "Input file" on "the Normalize By Copy Number" page.
Screenshot, notice the empty box in "Input file".
Can you help me with this?

Thanks,
Sofie



Inline afbeelding 1





--

Sofie Thijs 

PhD-student | FWO
Centrum voor Milieukunde (CMK)

T +32(0)11 26 83 73 

Universiteit Hasselt | Campus Diepenbeek
Agoralaan Gebouw D | B-3590 Diepenbeek 
Kantoor G1.97

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hmp_mock_16S.biom (50K) Download Attachment
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Re: input file empty

Jennifer Jackson
Hi Sofie,

My guess is that the datatype for the file has not been set so that the tool recognizes it as input.

Whenever this occurs (is true for most any tool, any Galaxy instance), review the tool form for input expected content, then adjust the input datasets in the history to match. Sometimes transformations are needed (content) that involve changing/modifying datatype. But often, as I suspect in your case, the issue is just that the newly upload file does not have the proper metadata assigned yet - and datatype can just be added. Click on the pencil icon to do this:
https://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset

If you need more help, contact the lab that runs this Galaxy instance directly. They will be able to rule out any server issues and will be the most familiar with the tool set.
http://wiki.galaxyproject.org/PublicGalaxyServers#Huttenhower_Lab

Good luck!

Jen
Galaxy team

On 6/10/14 5:53 PM, Sofie THIJS wrote:
Hi,

I have a problem with uploading the picrust biom-file to start the Normalize By Copy Number, on the webpage: http://huttenhower.sph.harvard.edu/galaxy/root?tool_id=PICRUSt_normalize.
In attachment is the template biom-file provided in the tutorial, so it should work.
After I upload the biom in 'get data'; I can not choose the file in the window "Input file" on "the Normalize By Copy Number" page.
Screenshot, notice the empty box in "Input file".
Can you help me with this?

Thanks,
Sofie



Inline afbeelding 1





--

Sofie Thijs 

PhD-student | FWO
Centrum voor Milieukunde (CMK)

T +32(0)11 26 83 73 

Universiteit Hasselt | Campus Diepenbeek
Agoralaan Gebouw D | B-3590 Diepenbeek 
Kantoor G1.97


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

-- 
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org