installing tool dependencies

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installing tool dependencies

Jochen
Hi,

I installed a bunch of tools at the same time and ran into some errors.
After repairing those tools some of the dependencies installations did
not work. If I try to repair the tools again I also get this error message:

Internal Server Error
Galaxy was unable to successfully complete your request

An error occurred.
This may be an intermittent problem due to load or other unpredictable
factors, reloading the page may address the problem.

The error has been logged to our team.


the tool I tried is called:
Name:
camera_annotate
Description:
[Metabolomics][W4M][LC-MS] CAMERA R Package - Annotation - Returns
annotation results (isotope peaks, adducts and fragments)

Maybe anyone has an idea how to solve this. Thanks in advance


Cheers Jochen


--
ETH Zurich
*Jochen Bick*
Animal Physiology
Institute of Agricultural Sciences
Postal address: Universitätstrasse 2 / LFW B 58.1
Office: Tannenstrasse 1 / TAN D 6.2
8092 Zurich, Switzerland

Phone +41 44 632 28 25
[hidden email] <mailto:[hidden email]>
www.ap.ethz.ch
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Re: installing tool dependencies

Marius van den Beek
Hello Jochen,

what version of galaxy are you running?
When you are doing this you should have a traceback in your logs,
this would be helpful to understand what is going on.

When you say "I installed a bunch of tools at the same time",
did you really trigger multiple installations at the same time,
or did you install a suite of tools?
I don't think the install framework can handle parallel installations (well).
It may work once in a while, but you're better of installing things sequentially.

Best,
Marius


On 12 January 2017 at 10:47, Jochen Bick <[hidden email]> wrote:
Hi,

I installed a bunch of tools at the same time and ran into some errors.
After repairing those tools some of the dependencies installations did
not work. If I try to repair the tools again I also get this error message:

Internal Server Error
Galaxy was unable to successfully complete your request

An error occurred.
This may be an intermittent problem due to load or other unpredictable
factors, reloading the page may address the problem.

The error has been logged to our team.


the tool I tried is called:
Name:
camera_annotate
Description:
[Metabolomics][W4M][LC-MS] CAMERA R Package - Annotation - Returns
annotation results (isotope peaks, adducts and fragments)

Maybe anyone has an idea how to solve this. Thanks in advance


Cheers Jochen


--
ETH Zurich
*Jochen Bick*
Animal Physiology
Institute of Agricultural Sciences
Postal address: Universitätstrasse 2 / LFW B 58.1
Office: Tannenstrasse 1 / TAN D 6.2
8092 Zurich, Switzerland

Phone +41 44 632 28 25
[hidden email] <mailto:[hidden email]>
www.ap.ethz.ch
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


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Re: installing tool dependencies

Jochen
Hej Marius,


> what version of galaxy are you running?

we are running 15.10 but it will be updated next Monday.

> When you are doing this you should have a traceback in your logs,
> this would be helpful to understand what is going on.

ok I will check the logs for the error.

>
> When you say "I installed a bunch of tools at the same time",
> did you really trigger multiple installations at the same time,
> or did you install a suite of tools?
> I don't think the install framework can handle parallel installations
> (well).
> It may work once in a while, but you're better of installing things
> sequentially.

thats true. I guess that was the reason on all the errors.

Thanks Jochen
___________________________________________________________
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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