mapping Summary from Bowtie

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mapping Summary from Bowtie

sridhar srinivasan

Dear Developers,

I am running Bowtie2 through galaxy interface, previously it gives the the mapping summary and convert the format to sam.. but now it directly convert the fastq file to bam and doesnt give the mapping summary.

how to get the mapping summary from bowtie2 using galaxy interface..

Thanks
Sridhar

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Re: mapping Summary from Bowtie

Jeremy Goecks
>
> how to get the mapping summary from bowtie2 using galaxy interface..

This isn't possible right now, but I've filed a Trello card that you can follow to watch progress on this enhancement:

https://trello.com/c/yFeXvhUg

Of course, a patch/contribution addressing this issue would be fantastic.

Best,
J.


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