minimus2 wrapper

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view
|

minimus2 wrapper

Peter Cock
Hi Edward,

Are you still working on your minimus2 wrapper? It does the basics very
nicely taking FASTA files as input (hiding the conversion into AMOS format
internally): http://toolshed.g2.bx.psu.edu/view/edward-kirton/minimus2

One minor improvement is the prefix parameters should be conditional
rather than always shown (just some XML tweaking). I could do that,
but where do you keep the upstream repository for your wrappers?
I'm presuming these are your accounts on GitHub and BitBucket:
https://bitbucket.org/eskirton & https://github.com/eskirton

Also I would like to see options for setting the parameters (REFCOUNT,
OVERLAP, CONSERR, MINID, MAXTRIM) for when the default values
do not work. That means XML additions and some Perl wrapper work
(outside my comfort zone).

Thanks,

Peter
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/