minimus2 wrapper

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minimus2 wrapper

Peter Cock
Hi Edward,

Are you still working on your minimus2 wrapper? It does the basics very
nicely taking FASTA files as input (hiding the conversion into AMOS format

One minor improvement is the prefix parameters should be conditional
rather than always shown (just some XML tweaking). I could do that,
but where do you keep the upstream repository for your wrappers?
I'm presuming these are your accounts on GitHub and BitBucket: &

Also I would like to see options for setting the parameters (REFCOUNT,
OVERLAP, CONSERR, MINID, MAXTRIM) for when the default values
do not work. That means XML additions and some Perl wrapper work
(outside my comfort zone).


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