moving tool-data : no build genome retrieve

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moving tool-data : no build genome retrieve

juliech
Hi all,

I'm moving the directory "tool-data" in other partition than galaxy-dist.
I've set the tool-data-path in universe.ini to this new location.

So, the indexes used by bowtie for example are retrieve without
problem. But no build genome are available when we upload dataset or
whit the pencil interface.

Is there anoter file to configure the path of tool-data ?

Thanks.

Julie
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Re: moving tool-data : no build genome retrieve

Daniel Blankenberg
Hi Julie,

Unfortunately the builds distributed with Galaxy are hardcoded to be located under “GALAXY_ROOT/tool-data/shared/ucsc/builds.txt”.  We should probably make this configurable/use the configured tool-data directory, however, in the mean time, would it be possible for you to set up a symlink on your server? Alternatively, you could set up a __dbkeys__ data table with all of the old entries migrated over.


Thanks for using Galaxy,

Dan

On Jul 9, 2014, at 5:44 AM, julie dubois <[hidden email]> wrote:

Hi all,

I'm moving the directory "tool-data" in other partition than galaxy-dist.
I've set the tool-data-path in universe.ini to this new location.

So, the indexes used by bowtie for example are retrieve without
problem. But no build genome are available when we upload dataset or
whit the pencil interface.

Is there anoter file to configure the path of tool-data ?

Thanks.

Julie
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/