picard wrappers to support the rna-seq metrics and downsample sam tools?

classic Classic list List threaded Threaded
2 messages Options
Reply | Threaded
Open this post in threaded view
|

picard wrappers to support the rna-seq metrics and downsample sam tools?

Brad Zeitner
I saw from: http://dev.list.galaxyproject.org/contributing-patches-to-toolshed-repos-td4663497.html  that B. Langhorst had submitted a change to the picard wrapper to support the rna-seq metrics – has that patch made it into any of the repo’s?  I’m not seeing it when I install the picard wrappers.
I’d prefer not having to manually apply that patch to get the support for running rna-seq metrics.

-Brad Zeitner

--CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
Reply | Threaded
Open this post in threaded view
|

Re: picard wrappers to support the rna-seq metrics and downsample sam tools?

Björn Grüning-3
Hi Brad,

can you please upvote that card?

https://trello.com/c/84df6nON

Thanks,
Bjoern

Am 03.04.2014 21:00, schrieb Brad Zeitner:

> I saw from: http://dev.list.galaxyproject.org/contributing-patches-to-toolshed-repos-td4663497.html  that B. Langhorst had submitted a change to the picard wrapper to support the rna-seq metrics - has that patch made it into any of the repo's?  I'm not seeing it when I install the picard wrappers.
> I'd prefer not having to manually apply that patch to get the support for running rna-seq metrics.
>
> -Brad Zeitner
> ________________________________
> --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>    http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>    http://galaxyproject.org/search/mailinglists/
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/