problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker'

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problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker'

Hans-Rudolf Hotz
Hi

I am in the process of updating our development server (from
"latest_2014.10.06", including the security fix from January to
"latest_15.03" ).

and when I restart the server, I get the following error:

...
galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to
worker thread
galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue
stopped
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
   File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
     func(*targs, **kargs)
   File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
shutdown
     if self.control_worker:
AttributeError: 'UniverseApplication' object has no attribute
'control_worker'
Error in sys.exitfunc:
Traceback (most recent call last):
   File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
     func(*targs, **kargs)
   File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
shutdown
     if self.control_worker:
AttributeError: 'UniverseApplication' object has no attribute
'control_worker'



Any help appreciated

Thank you very much
Hans-Rudolf


--



Hans-Rudolf Hotz, PhD
Bioinformatics Support

Friedrich Miescher Institute for Biomedical Research
Maulbeerstrasse 66
4058 Basel/Switzerland
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Re: problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker'

Dannon Baker-2
This logic was tweaked a bit in the last release to fix this working under uWSGI, but I'm not seeing it in a fresh checkout (and was pretty sure it worked before).  The control queue should be initialized at the end of galaxy's main buildapp() method.

How is the application being run?  (under uwsgi, paste, how many processes, etc)
Do you see any other errors in the startup log at all?  And, do you see "Initializing Galaxy Queue Worker" anywhere in the log (I'm guessing not)?

On Tue, Apr 14, 2015 at 10:47 AM Hans-Rudolf Hotz <[hidden email]> wrote:
Hi

I am in the process of updating our development server (from
"latest_2014.10.06", including the security fix from January to
"latest_15.03" ).

and when I restart the server, I get the following error:

...
galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to
worker thread
galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue
stopped
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
   File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
     func(*targs, **kargs)
   File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
shutdown
     if self.control_worker:
AttributeError: 'UniverseApplication' object has no attribute
'control_worker'
Error in sys.exitfunc:
Traceback (most recent call last):
   File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
     func(*targs, **kargs)
   File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
shutdown
     if self.control_worker:
AttributeError: 'UniverseApplication' object has no attribute
'control_worker'



Any help appreciated

Thank you very much
Hans-Rudolf


--



Hans-Rudolf Hotz, PhD
Bioinformatics Support

Friedrich Miescher Institute for Biomedical Research
Maulbeerstrasse 66
4058 Basel/Switzerland
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ignore my previous mail: Re: problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker'

Hans-Rudolf Hotz
In reply to this post by Hans-Rudolf Hotz
Please ignore my previous e-mail. The error was actually further up in
the logs, and easy to fix.  - sorry for filling up your inbox

Hans-Rudolf


PS: personal memo: don't do four galaxy related things at once.




On 04/14/2015 04:47 PM, Hans-Rudolf Hotz wrote:

> Hi
>
> I am in the process of updating our development server (from
> "latest_2014.10.06", including the security fix from January to
> "latest_15.03" ).
>
> and when I restart the server, I get the following error:
>
> ...
> galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to
> worker thread
> galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue
> stopped
> Error in atexit._run_exitfuncs:
> Traceback (most recent call last):
>    File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
>      func(*targs, **kargs)
>    File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
> shutdown
>      if self.control_worker:
> AttributeError: 'UniverseApplication' object has no attribute
> 'control_worker'
> Error in sys.exitfunc:
> Traceback (most recent call last):
>    File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs
>      func(*targs, **kargs)
>    File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in
> shutdown
>      if self.control_worker:
> AttributeError: 'UniverseApplication' object has no attribute
> 'control_worker'
>
>
>
> Any help appreciated
>
> Thank you very much
> Hans-Rudolf
>
>
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/