redirecting to unnamed history

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redirecting to unnamed history

Michael Mason
Hi I am running a work flow on data in a history with 54 input fastq files. About every other time I run Galaxy generates another history (unnamed) and sends a third to half the jobs to it. I am not clicking "send results to a new history" so I am not sure why this is happening. Any ideas? Is there something I should be looking for in galaxy's log file.
Thanks for any help,
Mike

Info from hg head.

changeset:   13753:d3b1f484c4b6
branch:      stable
tag:         tip
parent:      13751:deba1986ea22
parent:      13752:0af879ff3097
user:        Nate Coraor <[hidden email]>
date:        Tue Jul 15 11:33:46 2014 -0400
summary:     Merged in dannon/galaxy-central-prmaker/stable (pull request #439)

changeset:   13709:5273e0bf9ae5
parent:      13707:15d426f19dcc
parent:      13708:8b6e1ffaa053
user:        Dannon Baker <[hidden email]>
date:        Mon Jun 02 13:16:51 2014 -0400
summary:     merge next-stable


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Re: redirecting to unnamed history

John Chilton-4
Interesting. I have never seen that behavior before - any chance you
can try this patch and see if it fixes the problem?

https://gist.github.com/jmchilton/b9ae7588de4b21e59cec

-John

On Tue, Aug 19, 2014 at 1:24 PM, Michael Mason
<[hidden email]> wrote:

> Hi I am running a work flow on data in a history with 54 input fastq files.
> About every other time I run Galaxy generates another history (unnamed) and
> sends a third to half the jobs to it. I am not clicking "send results to a
> new history" so I am not sure why this is happening. Any ideas? Is there
> something I should be looking for in galaxy's log file.
> Thanks for any help,
> Mike
>
> Info from hg head.
>
> changeset:   13753:d3b1f484c4b6
> branch:      stable
> tag:         tip
> parent:      13751:deba1986ea22
> parent:      13752:0af879ff3097
> user:        Nate Coraor <[hidden email]>
> date:        Tue Jul 15 11:33:46 2014 -0400
> summary:     Merged in dannon/galaxy-central-prmaker/stable (pull request
> #439)
>
> changeset:   13709:5273e0bf9ae5
> parent:      13707:15d426f19dcc
> parent:      13708:8b6e1ffaa053
> user:        Dannon Baker <[hidden email]>
> date:        Mon Jun 02 13:16:51 2014 -0400
> summary:     merge next-stable
>
> ________________________________
> --CONFIDENTIALITY NOTICE--: The information contained in this email is
> intended for the exclusive use of the addressee and may contain confidential
> information. If you are not the intended recipient, you are hereby notified
> that any form of dissemination of this communication is strictly prohibited.
> www.benaroyaresearch.org
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
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Please keep all replies on the list by using "reply all"
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Re: redirecting to unnamed history

Michael Mason
Thanks John,
I cleaned things up with the python png script under scripts/clean up and that seams to have worked. We are freezing our pipeline for a month but if it happens again we'll try the patch and let you know how it goes.


-------- Original message --------
From: John Chilton
Date:08/19/2014 5:38 PM (GMT-08:00)
To: Michael Mason
Subject: Re: [galaxy-dev] redirecting to unnamed history

Interesting. I have never seen that behavior before - any chance you
can try this patch and see if it fixes the problem?

https://gist.github.com/jmchilton/b9ae7588de4b21e59cec

-John

On Tue, Aug 19, 2014 at 1:24 PM, Michael Mason
<[hidden email]> wrote:
> Hi I am running a work flow on data in a history with 54 input fastq files.
> About every other time I run Galaxy generates another history (unnamed) and
> sends a third to half the jobs to it. I am not clicking "send results to a
> new history" so I am not sure why this is happening. Any ideas? Is there
> something I should be looking for in galaxy's log file.
> Thanks for any help,
> Mike
>
> Info from hg head.
>
> changeset:   13753:d3b1f484c4b6
> branch:      stable
> tag:         tip
> parent:      13751:deba1986ea22
> parent:      13752:0af879ff3097
> user:        Nate Coraor <[hidden email]>
> date:        Tue Jul 15 11:33:46 2014 -0400
> summary:     Merged in dannon/galaxy-central-prmaker/stable (pull request
> #439)
>
> changeset:   13709:5273e0bf9ae5
> parent:      13707:15d426f19dcc
> parent:      13708:8b6e1ffaa053
> user:        Dannon Baker <[hidden email]>
> date:        Mon Jun 02 13:16:51 2014 -0400
> summary:     merge next-stable
>
> ________________________________
> --CONFIDENTIALITY NOTICE--: The information contained in this email is
> intended for the exclusive use of the addressee and may contain confidential
> information. If you are not the intended recipient, you are hereby notified
> that any form of dissemination of this communication is strictly prohibited.
> www.benaroyaresearch.org
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/

--CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/