Since the upgrade, I lost the samtools that I installed myself. Although it is still in the tool_conf.xml, it does not show up on the panel. I tried to install from toolshed, but failed. Error messages pasted below. Could someone take a look?
⇝AttributeError: 'NoneType' object has no attribute 'strip'
Module tool_shed.util.shed_util_common:1036 in get_repository_for_dependency_relationshipview >> ( name, owner, changeset_revision ))
Module tool_shed.util.shed_util_common:1867 in url_joinview >> parts.append( arg.strip( '/' ))
AttributeError: 'NoneType' object has no attribute 'strip'
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