I have upgraded to java 1.7.0 due to an issue with GATK2.
In addition to this when I try to run snpEff I am unable to select a genome source unless I use the "Named on demand" option. How do I get snpEff genome version data configured? The snpEff_genomes.loc file lists all of the genomes I need and many more.
I appreciate the help.
The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: