tool_conf.xml

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tool_conf.xml

Nancy Ide
Hello

I’m trying to include some of the tools available from usegalaxy.org in the tool menu of our instance of Galaxy. When I look at the list of tools in the Galaxy tool_conf.xml.main file, it does not seem to line up with what you see in the menu at usegalaxy.org. I’ve searched through various versions etc. on GitHub, but no luck—they all seem to be identical and do not seem to correspond with the menu at usegalaxy.org (I am looking specifically at the Text Manipulation part of the menu). Any clues on where I should look?

Thanks,
Nancy Ide


-----------------------------------------------------

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: [hidden email]
http://www.cs.vassar.edu/~ide

-----------------------------------------------------




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Re: tool_conf.xml

Martin Čech
Hi Nancy,

for the list of tools on Main that were installed from Tool Shed please look at https://github.com/galaxyproject/usegalaxy-playbook/blob/master/env/main/files/galaxy/var/shed_tool_conf.xml

The tool_conf.xml.main file only consists of tools that are not from the Tool Shed, which is a minority nowadays.

Martin

On Mon, Apr 30, 2018 at 9:57 AM Nancy Ide <[hidden email]> wrote:
Hello

I’m trying to include some of the tools available from usegalaxy.org in the tool menu of our instance of Galaxy. When I look at the list of tools in the Galaxy tool_conf.xml.main file, it does not seem to line up with what you see in the menu at usegalaxy.org. I’ve searched through various versions etc. on GitHub, but no luck—they all seem to be identical and do not seem to correspond with the menu at usegalaxy.org (I am looking specifically at the Text Manipulation part of the menu). Any clues on where I should look?

Thanks,
Nancy Ide


-----------------------------------------------------

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520
USA

tel: <a href="tel:(845)%20437-5988" value="+18454375988" target="_blank">(+1 845) 437 5988
fax: <a href="tel:(845)%20437-7498" value="+18454377498" target="_blank">(+1 845) 437 7498
email: [hidden email]
http://www.cs.vassar.edu/~ide

-----------------------------------------------------




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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Re: tool_conf.xml

Nancy Ide
Thanks!

On Apr 30, 2018, at 10:01 AM, Martin Čech <[hidden email]> wrote:

Hi Nancy,

for the list of tools on Main that were installed from Tool Shed please look at https://github.com/galaxyproject/usegalaxy-playbook/blob/master/env/main/files/galaxy/var/shed_tool_conf.xml

The tool_conf.xml.main file only consists of tools that are not from the Tool Shed, which is a minority nowadays.

Martin

On Mon, Apr 30, 2018 at 9:57 AM Nancy Ide <[hidden email]> wrote:
Hello

I’m trying to include some of the tools available from usegalaxy.org in the tool menu of our instance of Galaxy. When I look at the list of tools in the Galaxy tool_conf.xml.main file, it does not seem to line up with what you see in the menu at usegalaxy.org. I’ve searched through various versions etc. on GitHub, but no luck—they all seem to be identical and do not seem to correspond with the menu at usegalaxy.org (I am looking specifically at the Text Manipulation part of the menu). Any clues on where I should look?

Thanks,
Nancy Ide


-----------------------------------------------------

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520
USA

tel: <a href="tel:(845)%20437-5988" value="+18454375988" target="_blank" class="">(+1 845) 437 5988
fax: <a href="tel:(845)%20437-7498" value="+18454377498" target="_blank" class="">(+1 845) 437 7498
email: [hidden email]
http://www.cs.vassar.edu/~ide

-----------------------------------------------------




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/