tool installation problem

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tool installation problem

Matthias Bernt
Dear list,

I have a problem during installing a tool version that I previously
uninstalled. I get the message:

`Revision 0696db066a5b of repository deseq2 owned by iuc has already
been installed.`

It seems to be uninstalled on the file system. Are there any entries
that might be left in the DB?

Thanks in advance.

Cheers,
Matthias




--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Georg Teutsch
Administrative Geschäftsführerin/Administrative Managing Director:
Dr. Sabine König
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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  %(web_page_url)s

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Re: tool installation problem

Marius van den Beek
Hi Matthias,

It might just have been deactivated, in which case you can either
activate or uninstall the repo in the admin panel -> Manage tools ->
Advanced Search -> Deactivated or Uninstalled.

Hope that helps,
Marius

On Tue, 26 Mar 2019 at 15:59, Matthias Bernt <[hidden email]> wrote:

> Dear list,
>
> I have a problem during installing a tool version that I previously
> uninstalled. I get the message:
>
> `Revision 0696db066a5b of repository deseq2 owned by iuc has already
> been installed.`
>
> It seems to be uninstalled on the file system. Are there any entries
> that might be left in the DB?
>
> Thanks in advance.
>
> Cheers,
> Matthias
>
>
>
>
> --
>
> -------------------------------------------
> Matthias Bernt
> Bioinformatics Service
> Molekulare Systembiologie (MOLSYB)
> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
> Helmholtz Centre for Environmental Research GmbH - UFZ
> Permoserstraße 15, 04318 Leipzig, Germany
> Phone +49 341 235 482296,
> [hidden email], www.ufz.de
>
> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
> Helmholtz Centre for Environmental Research GmbH - UFZ
> Permoserstraße 15, 04318 Leipzig, Germany
> Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
> [hidden email], www.ufz.de
>
> Sitz der Gesellschaft/Registered Office: Leipzig
> Registergericht/Registration Office: Amtsgericht Leipzig
> Handelsregister Nr./Trade Register Nr.: B 4703
> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
> MinDirig Wilfried Kraus
> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
> Prof. Dr. Georg Teutsch
> Administrative Geschäftsführerin/Administrative Managing Director:
> Dr. Sabine König
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   %(web_page_url)s
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  %(web_page_url)s

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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Re: tool installation problem

Matthias Bernt
Hi Marius,

unfortunately this is not the case, but it's listed as "Uninstalled"
when I use the advanced search...

Would have been to easy :)

Cheers,
Matthias



On 26.03.19 16:40, Marius van den Beek wrote:

> Hi Matthias,
>
> It might just have been deactivated, in which case you can either
> activate or uninstall the repo in the admin panel -> Manage tools ->
> Advanced Search -> Deactivated or Uninstalled.
>
> Hope that helps,
> Marius
>
> On Tue, 26 Mar 2019 at 15:59, Matthias Bernt <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Dear list,
>
>     I have a problem during installing a tool version that I previously
>     uninstalled. I get the message:
>
>     `Revision 0696db066a5b of repository deseq2 owned by iuc has already
>     been installed.`
>
>     It seems to be uninstalled on the file system. Are there any entries
>     that might be left in the DB?
>
>     Thanks in advance.
>
>     Cheers,
>     Matthias
>
>
>
>
>     --
>
>     -------------------------------------------
>     Matthias Bernt
>     Bioinformatics Service
>     Molekulare Systembiologie (MOLSYB)
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone +49 341 235 482296,
>     [hidden email] <mailto:[hidden email]>, www.ufz.de <http://www.ufz.de>
>
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
>     [hidden email] <mailto:[hidden email]>, www.ufz.de
>     <http://www.ufz.de>
>
>     Sitz der Gesellschaft/Registered Office: Leipzig
>     Registergericht/Registration Office: Amtsgericht Leipzig
>     Handelsregister Nr./Trade Register Nr.: B 4703
>     Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>     MinDirig Wilfried Kraus
>     Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>     Prof. Dr. Georg Teutsch
>     Administrative Geschäftsführerin/Administrative Managing Director:
>     Dr. Sabine König
>     ___________________________________________________________
>     Please keep all replies on the list by using "reply all"
>     in your mail client.  To manage your subscriptions to this
>     and other Galaxy lists, please use the interface at:
>        %(web_page_url)s
>
>     To search Galaxy mailing lists use the unified search at:
>     http://galaxyproject.org/search/
>

--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Georg Teutsch
Administrative Geschäftsführerin/Administrative Managing Director:
Dr. Sabine König
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  %(web_page_url)s

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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Re: tool installation problem

Matthias Bernt
In reply to this post by Marius van den Beek
Hi Marius,

thanks a lot. I solved it. I finally found the reactivate link :) which
was unfortunately dysfunctional
(https://github.com/galaxyproject/galaxy/issues/7610) ..

Best,
Matthias


On 26.03.19 16:40, Marius van den Beek wrote:

> Hi Matthias,
>
> It might just have been deactivated, in which case you can either
> activate or uninstall the repo in the admin panel -> Manage tools ->
> Advanced Search -> Deactivated or Uninstalled.
>
> Hope that helps,
> Marius
>
> On Tue, 26 Mar 2019 at 15:59, Matthias Bernt <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     Dear list,
>
>     I have a problem during installing a tool version that I previously
>     uninstalled. I get the message:
>
>     `Revision 0696db066a5b of repository deseq2 owned by iuc has already
>     been installed.`
>
>     It seems to be uninstalled on the file system. Are there any entries
>     that might be left in the DB?
>
>     Thanks in advance.
>
>     Cheers,
>     Matthias
>
>
>
>
>     --
>
>     -------------------------------------------
>     Matthias Bernt
>     Bioinformatics Service
>     Molekulare Systembiologie (MOLSYB)
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone +49 341 235 482296,
>     [hidden email] <mailto:[hidden email]>, www.ufz.de <http://www.ufz.de>
>
>     Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
>     Helmholtz Centre for Environmental Research GmbH - UFZ
>     Permoserstraße 15, 04318 Leipzig, Germany
>     Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
>     [hidden email] <mailto:[hidden email]>, www.ufz.de
>     <http://www.ufz.de>
>
>     Sitz der Gesellschaft/Registered Office: Leipzig
>     Registergericht/Registration Office: Amtsgericht Leipzig
>     Handelsregister Nr./Trade Register Nr.: B 4703
>     Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>     MinDirig Wilfried Kraus
>     Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>     Prof. Dr. Georg Teutsch
>     Administrative Geschäftsführerin/Administrative Managing Director:
>     Dr. Sabine König
>     ___________________________________________________________
>     Please keep all replies on the list by using "reply all"
>     in your mail client.  To manage your subscriptions to this
>     and other Galaxy lists, please use the interface at:
>        %(web_page_url)s
>
>     To search Galaxy mailing lists use the unified search at:
>     http://galaxyproject.org/search/
>

--

-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
[hidden email], www.ufz.de

Helmholtz-Zentrum für Umweltforschung GmbH - UFZ
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 1269, Fax +49 341 235 1468 (optional)
[hidden email], www.ufz.de

Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Georg Teutsch
Administrative Geschäftsführerin/Administrative Managing Director:
Dr. Sabine König
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  %(web_page_url)s

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/