toolshed down?

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toolshed down?

Geert Vandeweyer
hi,

I'm getting the following error when trying to reach the main/test
toolsheds. Are they down?


****
This webpage is not available
Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected.
The website may be down, or your network may not be properly configured.
****

also from within galaxy, I can't reach it, nor can the galaxy-process
itself:

galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database
version 114
tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390
pysqlite>=2 egg successfully loaded for sqlite dialect
The URL
http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True
raised the exception:
<urlopen error [Errno 111] Connection refused>

The URL
http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True
raised the exception:
<urlopen error [Errno 111] Connection refused>

The URL
http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True
raised the exception:
<urlopen error [Errno 111] Connection refused>

The URL
http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True
raised the exception:
<urlopen error [Errno 111] Connection refused>

Traceback (most recent call last):
   File
"/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py",
line 37, in app_factory
     app = UniverseApplication( global_conf = global_conf, **kwargs )
   File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in
__init__
     verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get(
'__file__', None ), self.config.database_engine_options )
   File
"/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py",
line 56, in verify_tools
     tool_shed_accessible, missing_tool_configs_dict =
common_util.check_for_missing_tools( app, tool_panel_configs,
latest_tool_migration_script_number )
   File
"/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py",
line 66, in check_for_missing_tools
     return tool_shed_accessible, missing_tool_configs_dict
UnboundLocalError: local variable 'missing_tool_configs_dict' referenced
before assignment


--

Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: [hidden email]
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/pub/geert-vandeweyer/26/457/726

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Re: toolshed down?

Greg Von Kuster
Hello Geert,

Thanks for reporting this - it looks like our server or network is down.  We'll get this resolved as soon as possible and let you know when it is available.

Greg Von Kuster

On May 2, 2013, at 6:16 AM, Geert Vandeweyer wrote:

> hi,
>
> I'm getting the following error when trying to reach the main/test toolsheds. Are they down?
>
>
> ****
> This webpage is not available
> Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected. The website may be down, or your network may not be properly configured.
> ****
>
> also from within galaxy, I can't reach it, nor can the galaxy-process itself:
>
> galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database version 114
> tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390 pysqlite>=2 egg successfully loaded for sqlite dialect
> The URL
> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True
> raised the exception:
> <urlopen error [Errno 111] Connection refused>
>
> The URL
> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True
> raised the exception:
> <urlopen error [Errno 111] Connection refused>
>
> The URL
> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True
> raised the exception:
> <urlopen error [Errno 111] Connection refused>
>
> The URL
> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True
> raised the exception:
> <urlopen error [Errno 111] Connection refused>
>
> Traceback (most recent call last):
>  File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 37, in app_factory
>    app = UniverseApplication( global_conf = global_conf, **kwargs )
>  File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in __init__
>    verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options )
>  File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py", line 56, in verify_tools
>    tool_shed_accessible, missing_tool_configs_dict = common_util.check_for_missing_tools( app, tool_panel_configs, latest_tool_migration_script_number )
>  File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py", line 66, in check_for_missing_tools
>    return tool_shed_accessible, missing_tool_configs_dict
> UnboundLocalError: local variable 'missing_tool_configs_dict' referenced before assignment
>
>
> --
>
> Geert Vandeweyer, Ph.D.
> Department of Medical Genetics
> University of Antwerp
> Prins Boudewijnlaan 43
> 2650 Edegem
> Belgium
> Tel: +32 (0)3 275 97 56
> E-mail: [hidden email]
> http://ua.ac.be/cognitivegenetics
> http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

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Re: toolshed down?

Greg Von Kuster
Both tool shed's should now be accessible.  Sorry for the downtime.


On May 2, 2013, at 6:26 AM, Greg Von Kuster wrote:

> Hello Geert,
>
> Thanks for reporting this - it looks like our server or network is down.  We'll get this resolved as soon as possible and let you know when it is available.
>
> Greg Von Kuster
>
> On May 2, 2013, at 6:16 AM, Geert Vandeweyer wrote:
>
>> hi,
>>
>> I'm getting the following error when trying to reach the main/test toolsheds. Are they down?
>>
>>
>> ****
>> This webpage is not available
>> Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected. The website may be down, or your network may not be properly configured.
>> ****
>>
>> also from within galaxy, I can't reach it, nor can the galaxy-process itself:
>>
>> galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database version 114
>> tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390 pysqlite>=2 egg successfully loaded for sqlite dialect
>> The URL
>> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True
>> raised the exception:
>> <urlopen error [Errno 111] Connection refused>
>>
>> The URL
>> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True
>> raised the exception:
>> <urlopen error [Errno 111] Connection refused>
>>
>> The URL
>> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True
>> raised the exception:
>> <urlopen error [Errno 111] Connection refused>
>>
>> The URL
>> http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True
>> raised the exception:
>> <urlopen error [Errno 111] Connection refused>
>>
>> Traceback (most recent call last):
>> File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 37, in app_factory
>>   app = UniverseApplication( global_conf = global_conf, **kwargs )
>> File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in __init__
>>   verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options )
>> File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py", line 56, in verify_tools
>>   tool_shed_accessible, missing_tool_configs_dict = common_util.check_for_missing_tools( app, tool_panel_configs, latest_tool_migration_script_number )
>> File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py", line 66, in check_for_missing_tools
>>   return tool_shed_accessible, missing_tool_configs_dict
>> UnboundLocalError: local variable 'missing_tool_configs_dict' referenced before assignment
>>
>>
>> --
>>
>> Geert Vandeweyer, Ph.D.
>> Department of Medical Genetics
>> University of Antwerp
>> Prins Boudewijnlaan 43
>> 2650 Edegem
>> Belgium
>> Tel: +32 (0)3 275 97 56
>> E-mail: [hidden email]
>> http://ua.ac.be/cognitivegenetics
>> http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>> http://lists.bx.psu.edu/
>>
>> To search Galaxy mailing lists use the unified search at:
>> http://galaxyproject.org/search/mailinglists/
>


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/