wrapper accepts fastqcssanger when it shouldn't

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wrapper accepts fastqcssanger when it shouldn't

Nikhil Joshi-2
Hi all,

So in my wrapper for my trimming tool, sickle, I only allow fastq, fastqsanger, fastqillumina, or fastqsolexa input data. However, if a fastqsanger file's datatype has been erroneously changed to fastqcssanger, my tool will still show that file in the dropdown for the possible inputs. Why does this happen?

- Nik.

--
Nikhil Joshi
Bioinformatics Analyst/Programmer
UC Davis Bioinformatics Core
http://bioinformatics.ucdavis.edu/
najoshi -at- ucdavis -dot- edu
530.752.2698 (w)

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Re: wrapper accepts fastqcssanger when it shouldn't

Peter Cock
On Thu, Apr 2, 2015 at 10:02 AM, Nikhil Joshi <[hidden email]> wrote:
> Hi all,
>
> So in my wrapper for my trimming tool, sickle, I only allow fastq,
> fastqsanger, fastqillumina, or fastqsolexa input data. However, if a
> fastqsanger file's datatype has been erroneously changed to fastqcssanger,
> my tool will still show that file in the dropdown for the possible inputs.
> Why does this happen?
>
> - Nik.

Because you allowed "fastq", this includes all the subclasses of "fastq"
which (unfortunately in this case) includes "fastqcssanger".

Peter
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